View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10454_low_5 (Length: 464)
Name: NF10454_low_5
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 41258257 - 41258696
Alignment:
| Q |
19 |
ccattcacaaagtttgggatccacattaatttcatcaaatgaaagagtgagtgttcgacaaactaattgcgtatttgattctgttgttatgatgaaatat |
118 |
Q |
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| T |
41258257 |
ccattcacaaagtttgggatccacattaatttcatcaaatgaaagagtgagtgttcgacaaactaattgcgtatttgattctgttgttatgatgaaatat |
41258356 |
T |
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| Q |
119 |
ttagttgtctgaaataaatctttaagcaaaaagagatctatgttcctgaagttaattgttgttaccaaacataattctaccacccctagttctatagaat |
218 |
Q |
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| T |
41258357 |
ttagttgtctgaaataaatctttaagcaaaaagtgatctatgttcctaaagttaattgttattaccaaacataattctaccacccctagttctatagaat |
41258456 |
T |
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| Q |
219 |
atttttggttgatcaaaaccaacaacagttcagacaagtgcagaggacccatgcaaatattcaatgtatattcaactttttgttttgaaattcatcaaaa |
318 |
Q |
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| T |
41258457 |
atttttggttgatcaaaaccaacaacagttcagacaagtgcagaggatccatgcaaatattcaatgtatactcaactttttgttttgaaattcatcaaaa |
41258556 |
T |
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| Q |
319 |
cattgagatttcacacattgtaatcatagaatgcactctagttcaaaaatgt-----nnnnnnnnnnnnctataaaatgttcagcctgtcaacagtgtgg |
413 |
Q |
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| T |
41258557 |
cattgagatttcacacattgtaatcatagaatgcactctagttcaaaaatgtaaaaaaaaaaaaaaaaactataaaatgttcagcctgtcaacagtgtgg |
41258656 |
T |
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| Q |
414 |
caggtggaaactgctaagtgctatcaagtttatctgtgct |
453 |
Q |
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| T |
41258657 |
caggtggaaactgctaagtgctatcaagtttatttgtgct |
41258696 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 14715706 - 14715664
Alignment:
| Q |
26 |
caaagtttgggatccacattaatttcatcaaatgaaagagtga |
68 |
Q |
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| T |
14715706 |
caaagtgtgggatccacattaatttcatccaatgagagagtga |
14715664 |
T |
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