View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10454_low_6 (Length: 432)
Name: NF10454_low_6
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 16357560 - 16357976
Alignment:
| Q |
11 |
catcaatatcatcatttgtagtagcagttgtagatggagaacttgaattcgactcttgaacattatcaatggaagaaagagttgaaaatgaaacttg--- |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16357560 |
catcaatatcatcatttgtagtagcagttgtagatggagaacttgaattagactcttgaacattatcaatggaagaaagagttgaaaatgaaacttgatc |
16357659 |
T |
|
| Q |
108 |
---atcttgatcttgatcttccttaatctcctcaaacacaattgctgctgcttttgcagctgcaagttgaatgtccttaggtgatgtagtcgaaggcctc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16357660 |
ttgatcttgatcttgatcttccttaatctcctcaaatacaatggctgctgcttttgcagctgcaacttgaatgtccttaggtgatgtagtcgaaggcctc |
16357759 |
T |
|
| Q |
205 |
ggaagattttgagccaaattagggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtag |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16357760 |
ggaagattttgagccaaattagggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtag |
16357859 |
T |
|
| Q |
305 |
ggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctatatgtagggtg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16357860 |
ggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacacctctatatgtagggtg |
16357959 |
T |
|
| Q |
405 |
ttttgtgtcattttcat |
421 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
16357960 |
ttttgtgtcattttcat |
16357976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 225 - 350
Target Start/End: Original strand, 505505 - 505630
Alignment:
| Q |
225 |
agggaaattgaggtaagctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatatt |
324 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
505505 |
agggaaattaaggtatgctgaatgaccctttatagctaaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatatt |
505604 |
T |
|
| Q |
325 |
cttgacttctttcttggctcacgaat |
350 |
Q |
| |
|
||||| || || ||||||||||||| |
|
|
| T |
505605 |
cttgattttttctttggctcacgaat |
505630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 4268769 - 4268654
Alignment:
| Q |
256 |
atggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcag |
355 |
Q |
| |
|
|||| |||||| |||||||| || ||||||||||||||||| | ||| | | ||||||| ||||| |||||||| || || | ||| || || ||||||| |
|
|
| T |
4268769 |
atggttaaagctgctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcag |
4268670 |
T |
|
| Q |
356 |
atacccattttcccca |
371 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4268669 |
atacccattttcccca |
4268654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 9776593 - 9776648
Alignment:
| Q |
316 |
agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca |
371 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||| || || |||||||||||||| |
|
|
| T |
9776593 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
9776648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 371
Target Start/End: Original strand, 43561786 - 43561916
Alignment:
| Q |
241 |
gctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttg |
340 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||| || || | | |
|
|
| T |
43561786 |
gctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgag |
43561885 |
T |
|
| Q |
341 |
gctcacgaatttcagatacccattttcccca |
371 |
Q |
| |
|
| || || ||||| ||||||||||||||||| |
|
|
| T |
43561886 |
gttcgcggatttccgatacccattttcccca |
43561916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 36077744 - 36077813
Alignment:
| Q |
266 |
cagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctt |
335 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| | ||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
36077744 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgatttctt |
36077813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 41521801 - 41521670
Alignment:
| Q |
264 |
agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccat |
363 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||| || || | ||||| ||||| |||||||| || ||||||||||| | ||| || ||||||||| |
|
|
| T |
41521801 |
agcagccacatcatgagctctagcagccatatcaggagttggaaaagttccgagccaaattcttgatttttttcttggctctctaatctctgatacccat |
41521702 |
T |
|
| Q |
364 |
tttccccatgctctcattcttacacctctata |
395 |
Q |
| |
|
|| |||||| | ||||||||| |||||||| |
|
|
| T |
41521701 |
ttgccccattgacgcattcttactcctctata |
41521670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 395
Target Start/End: Complemental strand, 33589286 - 33589180
Alignment:
| Q |
289 |
gccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattcttacac |
388 |
Q |
| |
|
||||||||||| |||| |||||||||||||| |||| ||||||| ||| ||||| ||||| ||||||||||||||||||| || |||||| || | |
|
|
| T |
33589286 |
gccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgttcgcattctaactc |
33589187 |
T |
|
| Q |
389 |
ctctata |
395 |
Q |
| |
|
||||||| |
|
|
| T |
33589186 |
ctctata |
33589180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 395
Target Start/End: Complemental strand, 33602408 - 33602299
Alignment:
| Q |
286 |
gctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagatacccattttccccatgctctcattctta |
385 |
Q |
| |
|
|||||||||||||| || | | ||||||| ||||| |||| ||||||| ||| || || |||||||| |||||||||||||||| || |||||||| |
|
|
| T |
33602408 |
gctgccatttcagcggttgcgaatgttcctagccagattcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattctta |
33602309 |
T |
|
| Q |
386 |
cacctctata |
395 |
Q |
| |
|
|||||||||| |
|
|
| T |
33602308 |
cacctctata |
33602299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 51238023 - 51237916
Alignment:
| Q |
264 |
agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttctt-ggctcacgaatttcagataccca |
362 |
Q |
| |
|
|||||||||||| || |||| |||||||||||| | ||| || |||| || |||||||||| || || |||||| |||||||||||||| || ||||| |
|
|
| T |
51238023 |
agcagctacatcgtgtgctcgagctgccatttccggtgtgggaaatgtgccgagccatattcgggattt-tttcttaggctcacgaatttcggacaccca |
51237925 |
T |
|
| Q |
363 |
ttttcccca |
371 |
Q |
| |
|
||||||||| |
|
|
| T |
51237924 |
ttttcccca |
51237916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University