View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10454_low_7 (Length: 419)
Name: NF10454_low_7
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 17596584 - 17596193
Alignment:
| Q |
17 |
cattccattggcatggcgagcattgtgtacacaagtcataatcctaatctcagaagcagctctcaaattctctattgtccttagcttgttttgctcaaat |
116 |
Q |
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| T |
17596584 |
cattccattggcatggcgagcattgtgtacacaagccataatcctaatctcagaagcagctctcaaattctctattgtccttagcttgttttgctcaaat |
17596485 |
T |
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| Q |
117 |
gtagctcttggtttgtacattgcattgatgataggtgctactacaaatgtcataaaaaatatactatacaccataattgtaaatgcctgcggacccaaaa |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17596484 |
gtagctcttggtttatacattgcattgatgataggtgctactacaaatgtcataaaaaatatactatacaccataattgtaaatgcctgcggacccaaaa |
17596385 |
T |
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| Q |
217 |
cctgaccaatataaacaaaatttacatttagttatgaaccaagtacatacaaatttatgagtgaatgaacattttagtctagaattgcaagactaactaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17596384 |
cctgaccaatataaacaaaatttacatttagttatgaaccaagtacatacaaatttatgagtgaatgaacattttagtctagaattgcaagactaactaa |
17596285 |
T |
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| Q |
317 |
tttatcttttgttctttgcatatgtttgcatgtagatttttattaggggagagaaggtaatgcttagatgagtaattttcacgtcatttcat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17596284 |
tttatcttttgttctttgcatatgtttgcatgtagatttttattaggggagagaaggtaatgcttagatgagtaattttcacgtcatttcat |
17596193 |
T |
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