View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10454_low_8 (Length: 413)
Name: NF10454_low_8
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 40966032 - 40965706
Alignment:
| Q |
1 |
cctgccttcaaaaacaaccaaagttacattcctcaacaaaattgattttattttctttcataa---atagcctaaatgcgaaactaatacacactaaata |
97 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40966032 |
cctgccttcaaaaacaaccaaagtcacattcctcaacaaaattgattttattttctttcataataaatagcctaaatgcgaaactaatacacactaaata |
40965933 |
T |
|
| Q |
98 |
gtaggaaataaagaattgcgggtaacatatgtatgcaaaaatgagttttccatcaaaacttacatagggcacactatcctcctcttcttcgtcatagaac |
197 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40965932 |
gtaagaaataaagaattgcgggtaacatatgtatgcaaaattgagttttccatcaaaacttacatagggcacactatcctcctcttcttcgtcatagaac |
40965833 |
T |
|
| Q |
198 |
tcgacgctatcctcatccatttcggtctctgtat--nnnnnnnnttaattaaagtatatcgaaaaaagtagttaagaaactcatagtagttcagttctac |
295 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40965832 |
tcgacgctatcctcatccatttcggtctctgtataaaaaaaaaatcaattaaagtatatcgaaaaaagtagttaagaaactcatagtagttcagttctac |
40965733 |
T |
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| Q |
296 |
ctaccgtcttcaaattcaacatcatca |
322 |
Q |
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||||||||||||||||||||||||||| |
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| T |
40965732 |
ctaccgtcttcaaattcaacatcatca |
40965706 |
T |
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