View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10454_low_9 (Length: 373)
Name: NF10454_low_9
Description: NF10454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10454_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 40102852 - 40103158
Alignment:
| Q |
1 |
caaaatgaaaattaaatctaatacaattgcattggattaaattagcttttgtgtgtttctttagaaagagataataaactttagaatatacaagatatgc |
100 |
Q |
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| T |
40102852 |
caaaatgaaaattaaatctaatacaattgcattggattaaattagcttttgtgtgtttctttagaaagagataataaactttagaatatacaagatatgc |
40102951 |
T |
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| Q |
101 |
aataattttgtttgtttg-acatatatataacattgctattatcggcagaactcatttaagattaaaagcactaatctagaaaagaaagacacatatttt |
199 |
Q |
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| T |
40102952 |
aataattttgtttgtttggacatatatataacattgctattatcggcagaactcatttaagattaaaagcactaatctagaaaagaaagacacatatttt |
40103051 |
T |
|
| Q |
200 |
cattatgttatttgtatttcaattaatggaaatttgtggtgagattttccnnnnnnngtaagaaaaaatttgtggtgagaataaaactactaatctagaa |
299 |
Q |
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| T |
40103052 |
cattatgttatttgtatttcaattaatggaaatttgtggtgagattttcctttttttttaagaaaaaatttgtggtgagaataaaactactaatctagaa |
40103151 |
T |
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| Q |
300 |
aattaag |
306 |
Q |
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||||||| |
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| T |
40103152 |
aattaag |
40103158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 360
Target Start/End: Original strand, 40103189 - 40103220
Alignment:
| Q |
329 |
aatggcattgtattaaaatgctcactgatgtc |
360 |
Q |
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| T |
40103189 |
aatggcattgtattaaaatgctcactgatgtc |
40103220 |
T |
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