View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10455_1 (Length: 767)
Name: NF10455_1
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10455_1 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 26595215 - 26594725
Alignment:
| Q |
1 |
tagtctatatatgatgatatttttggatatggttcgagattctttattacatcaggagtagcagacgacaaagagcactcactgcataattgtctcattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26595215 |
tagtctatatatgatgatatttttggatatggttcgagattctttattacatcaggagtagcagacgacaaagagcactcactgcataattgtctcattg |
26595116 |
T |
|
| Q |
101 |
tgctaccaaacatcaacgaaaggaaataacaactcttacaaaaccattatcaccaacaaaaaagttaagtgtgaatttgtgctccatcgacatgatcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26595115 |
tgctaccaaacatcaacgaaaggaaataacaactcttacaaaaccattatca---acaaaaaagttaagtgtgaatttgtgctccatcgacatgatcttt |
26595019 |
T |
|
| Q |
201 |
accaaatctattacggaagacaaaattgtttttacggtatcttaaccttaagagattgtaatttgactttcatgacatgagatg-----ccacgtcagat |
295 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
26595018 |
accaaatctattgcggaagacaaaattgtttttacggtatcttaaccttaacagattgtaatttgactttcatgacatgagatgagatgccacgtgagat |
26594919 |
T |
|
| Q |
296 |
gatgatgtcatgtgacagtgagttgcttcatcaacatgcaatggtataaaaacaattatttacaggaacgtgctaacacccaaaataaaattaagagcag |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26594918 |
gatgatgtcatgtgacagtgagttgcttcatcaacatgcaatggtataaaaacaattatttacaggaacgtgctaacacccaaaataaaattaagagcag |
26594819 |
T |
|
| Q |
396 |
tgctaagtttctagaataatttagaagaattatactgtttgttttttgaaaaataatttagaagagttgaataagctcaatcaagttatttaat |
489 |
Q |
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| T |
26594818 |
tgctaagtttttagaataatttacaagaattatactgtttgttttttgaaaaataaattagaagagttgaataagctcaatcaagttatttaat |
26594725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 513 - 706
Target Start/End: Complemental strand, 26593920 - 26593735
Alignment:
| Q |
513 |
tgaatcattccggttgatacattgggacaatgggacatgttatcaaaaataatttcaataattaacttatgggttttctaagacgctttatcttagagcc |
612 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26593920 |
tgaatcattccgattgataaattgggacaatgggacatgttatcaaaaataatttcaataattaacctatgggttttctaagacgctttatcttagagcc |
26593821 |
T |
|
| Q |
613 |
atatgtttagagggaaacggtggtcatagttcctttaaacatatatagatcaaatagacgatgggacacaaattgaagaaagaacaagcagtga |
706 |
Q |
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| T |
26593820 |
atatgtttacagggaaacggtggtcatagttcctt--------tatagatcgaatagacgatgggacacacattgaagaaagaacaagcagtga |
26593735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 26608738 - 26608678
Alignment:
| Q |
26 |
gatatggttcgagattctttattacatcaggagtagcagacgacaaagagcactcactgca |
86 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
26608738 |
gatatggttcgagattctttattacatcagacctagcacacgacaaagagcactcactgca |
26608678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 481 - 516
Target Start/End: Complemental strand, 26593972 - 26593937
Alignment:
| Q |
481 |
ttatttaatagctaggttatcaactaatgagttgaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26593972 |
ttatttaatagctaggttatcaactaatgagttgaa |
26593937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 26608614 - 26608561
Alignment:
| Q |
154 |
caacaaaaaagttaagtgtgaatttgtgctccatcgacatgatctttaccaaat |
207 |
Q |
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|||| ||||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
26608614 |
caaccaaaaagtgaagtgtgaatttgtgtccaatcgacatgatctttaccaaat |
26608561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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