View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10455_10 (Length: 336)

Name: NF10455_10
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10455_10
NF10455_10
[»] chr1 (4 HSPs)
chr1 (1-321)||(36779478-36779804)
chr1 (271-321)||(2223395-2223445)
chr1 (222-321)||(37413256-37413365)
chr1 (271-314)||(37297177-37297220)
[»] chr2 (5 HSPs)
chr2 (222-321)||(32473208-32473317)
chr2 (222-321)||(40956905-40957015)
chr2 (227-281)||(23997258-23997312)
chr2 (271-321)||(34809241-34809290)
chr2 (222-283)||(33124821-33124882)
[»] chr8 (3 HSPs)
chr8 (218-317)||(38188492-38188601)
chr8 (222-272)||(22809903-22809953)
chr8 (227-314)||(3565623-3565711)
[»] chr7 (2 HSPs)
chr7 (215-321)||(7990744-7990860)
chr7 (282-318)||(42429315-42429351)
[»] chr6 (3 HSPs)
chr6 (222-321)||(34122309-34122418)
chr6 (227-283)||(1867696-1867752)
chr6 (233-268)||(2511657-2511692)
[»] chr4 (2 HSPs)
chr4 (222-321)||(13718930-13719039)
chr4 (271-312)||(859334-859375)
[»] chr3 (4 HSPs)
chr3 (224-321)||(17526520-17526611)
chr3 (216-266)||(42677493-42677543)
chr3 (282-318)||(23779210-23779246)
chr3 (224-256)||(40382733-40382765)
[»] chr5 (1 HSPs)
chr5 (222-283)||(27642783-27642844)
[»] scaffold0638 (1 HSPs)
scaffold0638 (282-314)||(7797-7829)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 36779478 - 36779804
Alignment:
Q  1 cttgcgaccattaaaaacttatgattaattctacataaccatctaaaaatgttcttcaacaaactatttactctgaaagatagtatggtcaagttcctac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36779478 cttgcgaccattaaaaacttatgattaattctacataaccatctaaaaatgttcttcaacaa-ctatttactctgaaagatagtatggtcaagttcctac 36779576  T
Q  101 caaatgacacattgcgctcaagttcccatggtacattaccacgttgacacgatctaattggaatgacacgaggatctacaaatacaaatagtagtaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||| ||||||||    
T  36779577 caaatgacacattgcgctcaagttcccatggtacattaccacgttgacacaatctaattggaatgacacgaggatctaca---acaaatagcagtaatgt 36779673  T
Q  201 gctatttactc-gtggagaaaaacttgcttgaacacaaatataaataaaaagggtttggacacactcacat---------aaatagataaaaaagaattt 290  Q
    | ||||||||| | ||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||         ||||| ||||||||||||||    
T  36779674 gttatttactcggcggagaaaaatttgcttgagcacaaatataaataaaaagggttttgacacactcacataagtagagaaaataaataaaaaagaattt 36779773  T
Q  291 agtcatatcattcaattattttttctttaat 321  Q
    |||||||||||| ||||||||||||||||||    
T  36779774 agtcatatcatttaattattttttctttaat 36779804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 2223445 - 2223395
Alignment:
Q  271 aaatagataaaaaagaatttagtcatatcattcaattattttttctttaat 321  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  2223445 aaataaataaaaaagaatttagttatatcattcaattattttttctttaat 2223395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 37413365 - 37413256
Alignment:
Q  222 acttgcttgaacacaaatataaataaaaagggtttggacacactcacataaatag----------ataaaaaagaatttagtcatatcattcaattattt 311  Q
    ||||||||||||||||||| ||||||||| ||||| | ||||||||||||| |||          || ||||||||||||||||||| ||| ||||||||    
T  37413365 acttgcttgaacacaaatacaaataaaaaaggtttaggcacactcacataagtagagaaaattaaatgaaaaagaatttagtcatattatttaattattt 37413266  T
Q  312 tttctttaat 321  Q
    ||||||||||    
T  37413265 tttctttaat 37413256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 37297177 - 37297220
Alignment:
Q  271 aaatagataaaaaagaatttagtcatatcattcaattatttttt 314  Q
    |||||||| |||||||||||| |||||| |||||||||||||||    
T  37297177 aaatagatgaaaaagaatttaatcatattattcaattatttttt 37297220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 32473208 - 32473317
Alignment:
Q  222 acttgcttgaacacaaatataaataaaaagggtttggacacactcacat----------aaatagataaaaaagaatttagtcatatcattcaattattt 311  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||          ||||| || |||||||||||| | ||||| |||||||||||    
T  32473208 acttgcttgaacacaaataaaaataaaaagggtttggacacactcacataaataaaaaaaaataaatgaaaaagaatttaattatatctttcaattattt 32473307  T
Q  312 tttctttaat 321  Q
    ||||||||||    
T  32473308 tttctttaat 32473317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 40956905 - 40957015
Alignment:
Q  222 acttgcttgaacacaaatataaataaaaa-gggtttggacacactcacataaatagataaaaa----------agaatttagtcatatcattcaattatt 310  Q
    ||||||||||||||||||| ||||||||| |||||||  |||||||||| || |||| |||||          ||||||||||||||||||||||||||     
T  40956905 acttgcttgaacacaaatacaaataaaaaagggtttgagcacactcacacaagtagagaaaaataattgaaaaagaatttagtcatatcattcaattatc 40957004  T
Q  311 ttttctttaat 321  Q
    |||||||||||    
T  40957005 ttttctttaat 40957015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 23997312 - 23997258
Alignment:
Q  227 cttgaacacaaatataaataaaaagggtttggacacactcacataaatagataaa 281  Q
    ||||||||||||||||||| ||| | ||||||| |||||||||||||| ||||||    
T  23997312 cttgaacacaaatataaatgaaatgtgtttggaaacactcacataaatggataaa 23997258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 34809290 - 34809241
Alignment:
Q  271 aaatagataaaaaagaatttagtcatatcattcaattattttttctttaat 321  Q
    ||||| || ||||||||||||||||||||||| |||| |||||||||||||    
T  34809290 aaataaatgaaaaagaatttagtcatatcatttaatt-ttttttctttaat 34809241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 33124821 - 33124882
Alignment:
Q  222 acttgcttgaacacaaatataaataaaaagggtttggacacactcacataaatagataaaaa 283  Q
    ||||||||||||||||||| ||||||| | | |||||| ||||||||| || |||| |||||    
T  33124821 acttgcttgaacacaaatacaaataaataagatttggatacactcacacaagtagagaaaaa 33124882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 38188601 - 38188492
Alignment:
Q  218 aaaaacttgcttgaacacaaatataaataaaaagggtttggacacactcacataaatagataaaaa----------agaatttagtcatatcattcaatt 307  Q
    ||||| ||||||||||| |||||||||||||||  |||||| ||||||||||||| |||| |||||          ||||||||||||||||||||||||    
T  38188601 aaaaatttgcttgaacagaaatataaataaaaaaagtttgggcacactcacataattagagaaaaataaatagaaaagaatttagtcatatcattcaatt 38188502  T
Q  308 attttttctt 317  Q
    ||||||||||    
T  38188501 attttttctt 38188492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 22809953 - 22809903
Alignment:
Q  222 acttgcttgaacacaaatataaataaaaagggtttggacacactcacataa 272  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||| ||||    
T  22809953 acttgcttgaacacaaatacaaataaaaatggtttgaacacactcatataa 22809903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 3565711 - 3565623
Alignment:
Q  227 cttgaacacaaatataaataaaaagggtttggacacactca--cataaatagataaaaaagaatttagtcatatcattcaattatttttt 314  Q
    ||||||||||||||||||| ||| | |||| | ||||||||  || ||||| || | |||||||||||||| |||||| |||||||||||    
T  3565711 cttgaacacaaatataaatgaaatgtgtttcgtcacactcaagca-aaataaatgataaagaatttagtcaaatcatttaattatttttt 3565623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 321
Target Start/End: Complemental strand, 7990860 - 7990744
Alignment:
Q  215 gagaaaaacttgcttgaacacaaatataaataaaaagggtttggacacactcac----------ataaatagataaaaaagaatttagtcatatcattca 304  Q
    |||||||||||||||||||||||||| ||||||||| ||||||  |||||||||          | ||||| || ||||||| |||| | ||||||||||    
T  7990860 gagaaaaacttgcttgaacacaaatacaaataaaaaaggtttgagcacactcacacaagtagagaaaaataaatgaaaaagattttacttatatcattca 7990761  T
Q  305 attattttttctttaat 321  Q
    |||||||||||||||||    
T  7990760 attattttttctttaat 7990744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 42429351 - 42429315
Alignment:
Q  282 aaagaatttagtcatatcattcaattattttttcttt 318  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42429351 aaagaatttagtcacatcattcaattattttttcttt 42429315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 34122309 - 34122418
Alignment:
Q  222 acttgcttgaacacaaatataaataaaaagggtttggacacactcacataaatagataaaaa----------agaatttagtcatatcattcaattattt 311  Q
    |||| |||||||||||||  |||||||||| |||||| |||||||||| || |||| |||||          |||||||| |||||||||||||||||||    
T  34122309 actttcttgaacacaaatgcaaataaaaagagtttgggcacactcacacaagtagaaaaaaataattgaaaaagaatttactcatatcattcaattattt 34122408  T
Q  312 tttctttaat 321  Q
    ||||||||||    
T  34122409 tttctttaat 34122418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 1867752 - 1867696
Alignment:
Q  227 cttgaacacaaatataaataaaaagggtttggacacactcacataaatagataaaaa 283  Q
    ||||||||||||||||||| |||   |||||||||||||||||||||| || |||||    
T  1867752 cttgaacacaaatataaatgaaatatgtttggacacactcacataaatggagaaaaa 1867696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 2511657 - 2511692
Alignment:
Q  233 cacaaatataaataaaaagggtttggacacactcac 268  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2511657 cacaaatataaataaaaagtgtttggacacactcac 2511692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 13718930 - 13719039
Alignment:
Q  222 acttgcttgaacacaaatataaataaaaagggtttggacacactcac----------ataaatagataaaaaagaatttagtcatatcattcaattattt 311  Q
    |||| |||||||||||||| ||||||||| |||||||||||||||||          | ||||| || ||||||||| || |||||||||| ||||||||    
T  13718930 acttacttgaacacaaatacaaataaaaaaggtttggacacactcacacaagtagagaaaaataaatgaaaaagaatgtaatcatatcatttaattattt 13719029  T
Q  312 tttctttaat 321  Q
    ||||||||||    
T  13719030 tttctttaat 13719039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 859375 - 859334
Alignment:
Q  271 aaatagataaaaaagaatttagtcatatcattcaattatttt 312  Q
    ||||| || ||||||||||||||||||| |||||||||||||    
T  859375 aaataaatgaaaaagaatttagtcatataattcaattatttt 859334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 17526520 - 17526611
Alignment:
Q  224 ttgcttgaacacaaatataaataaaaagggtttggacacactcacataaatagataaaaaagaatttagtcatatcattcaattattttttctttaat 321  Q
    ||||||||||||||||| ||| ||||| | ||| | |||||||||||||||||| |||||  |||      |||||||||||||||||||||||||||    
T  17526520 ttgcttgaacacaaatacaaacaaaaaagatttaggcacactcacataaatagagaaaaataaat------atatcattcaattattttttctttaat 17526611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 42677543 - 42677493
Alignment:
Q  216 agaaaaacttgcttgaacacaaatataaataaaaagggtttggacacactc 266  Q
    ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||    
T  42677543 agaaagacttgtttgaacataaatataaataaaaagggtttgaacacactc 42677493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 23779246 - 23779210
Alignment:
Q  282 aaagaatttagtcatatcattcaattattttttcttt 318  Q
    |||||||||||||  ||||||||||||||||||||||    
T  23779246 aaagaatttagtcccatcattcaattattttttcttt 23779210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 40382733 - 40382765
Alignment:
Q  224 ttgcttgaacacaaatataaataaaaagggttt 256  Q
    ||||||||||||||||||||||||||| |||||    
T  40382733 ttgcttgaacacaaatataaataaaaaaggttt 40382765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 27642783 - 27642844
Alignment:
Q  222 acttgcttgaacacaaatataaataaaaagggtttggacacactcacataaatagataaaaa 283  Q
    ||||||||||||||||||| ||| ||||| ||||||  |||||||||| || |||| |||||    
T  27642783 acttgcttgaacacaaatacaaaaaaaaaaggtttgagcacactcacacaagtagagaaaaa 27642844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 7829 - 7797
Alignment:
Q  282 aaagaatttagtcatatcattcaattatttttt 314  Q
    |||||||||||||| ||||||||||||||||||    
T  7829 aaagaatttagtcacatcattcaattatttttt 7797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University