View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10455_13 (Length: 301)

Name: NF10455_13
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10455_13
NF10455_13
[»] chr1 (8 HSPs)
chr1 (13-292)||(15035514-15035793)
chr1 (13-172)||(14502740-14502899)
chr1 (162-281)||(14524472-14524591)
chr1 (162-292)||(14502188-14502318)
chr1 (162-292)||(14534449-14534579)
chr1 (19-172)||(14523897-14524050)
chr1 (42-101)||(14534329-14534388)
chr1 (199-289)||(14466084-14466174)
[»] scaffold0400 (2 HSPs)
scaffold0400 (13-292)||(10985-11264)
scaffold0400 (224-292)||(5489-5557)
[»] scaffold0365 (2 HSPs)
scaffold0365 (13-292)||(11628-11907)
scaffold0365 (224-292)||(6133-6201)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 15035793 - 15035514
Alignment:
Q  13 atgaagccagaaagactgttatttccaagatctagtctctggaggttgactaaattcccaatttcatgaggaatgtggccaaaaagttgattggaacgta 112  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||| |||    
T  15035793 atgaagccaaaaagactgttatttccaagatatagtctctggaggttgaccaaattcccaatttcacgaggaatctggccaaaaagttgattcgaatgta 15035694  T
Q  113 acttgagatttgttattttggccaactttcctatagaaattgagatagacccagtgagataattaaagctgagatcaagatacgatagtttggacaaatt 212  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  15035693 acatgagattttttattttggccaactttcctatagaaattgagatagacccggtgagataattaaagctgagatcaagataggatagtttgtacaaatt 15035594  T
Q  213 accaatggtattgggaatggtaccagagagttcatttagtgacaaatcaagagtttctagattggacatcaccccaatat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  15035593 accaatggtattgggaatggtaccagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatat 15035514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 14502899 - 14502740
Alignment:
Q  13 atgaagccagaaagactgttatttccaagatctagtctctggaggttgactaaattcccaatttcatgaggaatgtggccaaaaagttgattggaacgta 112  Q
    ||||||||||||||  ||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||  ||    
T  14502899 atgaagccagaaaggttgttatttccaagatatagtctttggaggttgaccaaattcccaatttcacgaggaatttggccaataagttgattggaatata 14502800  T
Q  113 acttgagatttgttattttggccaactttcctatagaaattgagatagacccagtgagat 172  Q
    |    ||||||| ||| ||||||||| ||||||||||||| | |||||||||||||||||    
T  14502799 aaaaaagatttgatatattggccaacattcctatagaaatagggatagacccagtgagat 14502740  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 281
Target Start/End: Original strand, 14524472 - 14524591
Alignment:
Q  162 cccagtgagataattaaagctgagatcaagatacgatagtttggacaaattaccaatggtattgggaatggtaccagagagttcatttagtgacaaatca 261  Q
    ||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||    
T  14524472 cccagtgagataattgaagctaagatcaagataggatagttttgacaaattaccaatgctattgtgaatgctaccagagagtttatttagtgacaaatca 14524571  T
Q  262 agagtttctagattggacat 281  Q
    ||||| ||||||||| ||||    
T  14524572 agagtgtctagattgcacat 14524591  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 14502318 - 14502188
Alignment:
Q  162 cccagtgagataattaaagctgagatcaagatacgatagtttggacaaattaccaatggtattgggaatggtaccagagagttcatttagtgacaaatca 261  Q
    |||| |||||||||| || |||||||||||||| ||||||||||||||||||||||   | ||||||||| |||||||||| | ||||||||||||||||    
T  14502318 cccaatgagataattgaaactgagatcaagataagatagtttggacaaattaccaacacttttgggaatgttaccagagagattatttagtgacaaatca 14502219  T
Q  262 agagtttctagattggacatcaccccaatat 292  Q
    ||||| ||||| || |||||||| |||||||    
T  14502218 agagtgtctaggtttgacatcactccaatat 14502188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 14534449 - 14534579
Alignment:
Q  162 cccagtgagataattaaagctgagatcaagatacgatagtttggacaaattaccaatggtattgggaatggtaccagagagttcatttagtgacaaatca 261  Q
    ||||||||||||||| || |||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||| |  || | ||||||||||    
T  14534449 cccagtgagataattgaaactgagatcaagataagatatttttgacaaattaccaatgctattgggaatggtaccagagagattgttaactgacaaatca 14534548  T
Q  262 agagtttctagattggacatcaccccaatat 292  Q
    ||||||| |||| | |||||| | |||||||    
T  14534549 agagtttttagactagacatctctccaatat 14534579  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 14523897 - 14524050
Alignment:
Q  19 ccagaaagactgttatttccaagatctagtctctggaggttgactaaattcccaatttcatgaggaatgtggccaaaaagttgattggaacgtaacttga 118  Q
    ||||||||| | |||| ||||||||  ||| ||| ||||||||| ||||||||||||||  |||||||||||||||||||||| |||     ||||| ||    
T  14523897 ccagaaagattattatatccaagattgagtttcttgaggttgaccaaattcccaatttcgcgaggaatgtggccaaaaagttggttgtggtataactgga 14523996  T
Q  119 gatttgttattttggccaactttcctatagaaattgagatagacccagtgagat 172  Q
    ||| || ||| |||| ||| |||||||||||| | ||||| |||||||||||||    
T  14523997 gatatgatatattggtcaattttcctatagaagtagagattgacccagtgagat 14524050  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 14534329 - 14534388
Alignment:
Q  42 atctagtctctggaggttgactaaattcccaatttcatgaggaatgtggccaaaaagttg 101  Q
    |||||||||||  |||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  14534329 atctagtctctcaaggttgaccaaattcccaatttcacgaggaatgtggccaataagttg 14534388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 14466174 - 14466084
Alignment:
Q  199 agtttggacaaattaccaatggtattgggaatggtaccagagagttcatttagtgacaaatcaagagtttctagattggacatcaccccaa 289  Q
    |||||||||| |  |||||||||| |||||||   |||||||||||||||   |||||| |||| ||| |||||||||||| |||| ||||    
T  14466174 agtttggacagaaaaccaatggtactgggaatatgaccagagagttcattatatgacaactcaatagtatctagattggacttcacaccaa 14466084  T

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Target: scaffold0400 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 11264 - 10985
Alignment:
Q  13 atgaagccagaaagactgttatttccaagatctagtctctggaggttgactaaattcccaatttcatgaggaatgtggccaaaaagttgattggaacgta 112  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||| |||    
T  11264 atgaagccagaaaggctgttatttccaagatatagtctctggaggttgactaaatttcctatttcacgaggaatgtggccgaaaagttgattggaatgta 11165  T
Q  113 acttgagatttgttattttggccaactttcctatagaaattgagatagacccagtgagataattaaagctgagatcaagatacgatagtttggacaaatt 212  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  11164 acttgagatttgttattttggccaactttcctaaagaaatagagatagacccactgagataattaaagctgagatcaagataggatagtttggagaaatt 11065  T
Q  213 accaatggtattgggaatggtaccagagagttcatttagtgacaaatcaagagtttctagattggacatcaccccaatat 292  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  11064 accaatggtattgggaacgctaccagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatat 10985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 5557 - 5489
Alignment:
Q  224 tgggaatggtaccagagagttcatttagtgacaaatcaagagtttctagattggacatcaccccaatat 292  Q
    |||||||| |||||||||||  ||| ||||| |||||||||||||| ||||| ||||||||||||||||    
T  5557 tgggaatgttaccagagagtctattaagtgataaatcaagagtttccagatttgacatcaccccaatat 5489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 11907 - 11628
Alignment:
Q  13 atgaagccagaaagactgttatttccaagatctagtctctggaggttgactaaattcccaatttcatgaggaatgtggccaaaaagttgattggaacgta 112  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||| |||    
T  11907 atgaagccagaaaggctgttatttccaagatatagtctctggaggttgactaaatttcctatttcacgaggaatgtggccgaaaagttgattggaatgta 11808  T
Q  113 acttgagatttgttattttggccaactttcctatagaaattgagatagacccagtgagataattaaagctgagatcaagatacgatagtttggacaaatt 212  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  11807 acttgagatttgttattttggccaactttcctaaagaaatagagatagacccactgagataattaaagctgagatcaagataggatagtttggagaaatt 11708  T
Q  213 accaatggtattgggaatggtaccagagagttcatttagtgacaaatcaagagtttctagattggacatcaccccaatat 292  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  11707 accaatggtattgggaacgctaccagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatat 11628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 6201 - 6133
Alignment:
Q  224 tgggaatggtaccagagagttcatttagtgacaaatcaagagtttctagattggacatcaccccaatat 292  Q
    |||||||| |||||||||||  ||| ||||| |||||||||||||| ||||| ||||||||||||||||    
T  6201 tgggaatgttaccagagagtctattaagtgataaatcaagagtttccagatttgacatcaccccaatat 6133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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