View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10455_3 (Length: 664)
Name: NF10455_3
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10455_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 13 - 661
Target Start/End: Complemental strand, 26595818 - 26595176
Alignment:
| Q |
13 |
aacctgtgatgcacctaatcggatatattctcaataatttccacagtttaagaaagnnnnnnnnn--tccacagtttaattaaacaattagacaaagttc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26595818 |
aaccagtgatgcacctaatcggatatattctcaataatttccacagtttaagaaagaaaaaaaaaaatccacagtttaattaaacaattagacaaagttc |
26595719 |
T |
|
| Q |
111 |
agcggtttagaattgattccaaaaaccttgatcttgtcacaagctccaccaattgaattaagtctagctagctagtctaatttgcataaatatctttata |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26595718 |
aacggtttagaattgattccaaaaaccttgatctcgtcacaagctccaccaattgaattaagtctagctagctagtctaatttgcataaatatctttata |
26595619 |
T |
|
| Q |
211 |
taacaattaaacctttaagtttgtcaattttacataaaaactaagatgctcacgactttgtgtgtgttcacaaaaattctatgatattttcgatgataat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26595618 |
taacaattaaacctttaagtttgtcaattttacataaaaactaagatgctcacgactttgtgtgtgttcacaaaaattctatgatattttcgatgataat |
26595519 |
T |
|
| Q |
311 |
gtggcaattggcacatttgtaatgattcttaatccttctttctgtcccaaatacaatagacccaccaataatcaaagaggataaacttttgtcttcagat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26595518 |
gtggcaattggcacatttgtaatgattcttaatccttctttctgtcccaaatacaatagacccaccaataatcaaagaggataaacttttgtcttcagtt |
26595419 |
T |
|
| Q |
411 |
ggaatacatagttaagaaatatgcttgggtatatatgacaaattattttacattcgtgatgctcaaaaagaaaagaaatttgttcaacgtatctaagtag |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
26595418 |
ggaatacatagttaagaaatatgcttgggtatatatgaccaattattttacattcgtgatgctcaaaaagaaacgaaatttgttcaacgtatgtaagtag |
26595319 |
T |
|
| Q |
511 |
aattaatggacaagaaccaatgcnnnnnnnnnnnnnnnnnnaaaactcatataattaaaagccgaatatgggatattaatgtttggataattaattattc |
610 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26595318 |
aattaatggacaagaaccaatgc--------tatatatataaaaactcatataattaaaagtcgaatatgggatattaatgtttggataattaattattc |
26595227 |
T |
|
| Q |
611 |
tcctattcttatagtctatatatgatgatatttttggatattgttcgagat |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26595226 |
tcctattcttatagtctatatatgatgatatttttggatatggttcgagat |
26595176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 26609681 - 26609639
Alignment:
| Q |
21 |
atgcacctaatcggatatattctcaataatttccacagtttaa |
63 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
26609681 |
atgcacgtaaacggatatattctcgataatttccacagtttaa |
26609639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 26601680 - 26601636
Alignment:
| Q |
18 |
gtgatgcacctaatcggatatattctcaataatttccacagtttaa |
63 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
26601680 |
gtgatgcacgtaa-cggatatattctcaatgatttccacagtttaa |
26601636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 341 - 420
Target Start/End: Complemental strand, 26609082 - 26609002
Alignment:
| Q |
341 |
aatccttctttctgtcccaaatacaatagacccaccaataatcaaagaggat-aaacttttgtcttcagatggaatacata |
420 |
Q |
| |
|
||||||||||| |||||| ||||| | ||||||||| ||||| || ||||| ||||||| |||||||||||||||||| |
|
|
| T |
26609082 |
aatccttctttttgtcccgaatactagagacccaccgataattgaacaggatccaacttttcccttcagatggaatacata |
26609002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University