View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10455_5 (Length: 540)
Name: NF10455_5
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10455_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 23 - 540
Target Start/End: Original strand, 15393539 - 15394068
Alignment:
| Q |
23 |
ggacatttgttaaataatttgtttacttagctaaaatcttgttgatgaatggaaccacccagtgaagtgttttacttttgcttca-------gaatgttt |
115 |
Q |
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| T |
15393539 |
ggacatttgttaaataatttgtttacttagctaaaatcttgttgatgaatggaaccacccagtgaagtgttttacttttgcttcattaaagagcatgttt |
15393638 |
T |
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| Q |
116 |
tgttttctgttaggagccctcaaacatcagttcaaaaagttagatagatagaaaatctttgtttgattttcaataaataataatatcactcgagaaatga |
215 |
Q |
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| T |
15393639 |
tgttttctgttaggagccctcaaacatcagttcaaaaagttagatagaaagaaaatctttgtttgattttcaataaatcataatatcactcgagaaatga |
15393738 |
T |
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| Q |
216 |
tgtaaaatgatcgttgatgtcacttnnnnnnnnnnnnnnnnntcactacactctaccccaattttaaaaatacaataaaattgagttcagcttgcaaaat |
315 |
Q |
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| T |
15393739 |
tgtaaaatgatcgttgatgtcactttaataataataataatatcactacactcttccccaattttaaaaatacaataaaattgagttcagcttgcaaaat |
15393838 |
T |
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| Q |
316 |
gaagttcactcaaatatgaagtttgccggcttcaatccaaacttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagt |
415 |
Q |
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| T |
15393839 |
gaagttcactcaaatatgaagtttgccggcttcaatccaaacttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagt |
15393938 |
T |
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| Q |
416 |
ttttgttctgtttccaatgttttctgta-----nnnnnnnngtgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaa |
510 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15393939 |
ttttgttctgtttccaatgttttctgtatttttttttttttgtgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaa |
15394038 |
T |
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| Q |
511 |
gttattgaatacagttcgaaatggcttcac |
540 |
Q |
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| T |
15394039 |
gttattgaatacagttcgaaatggcttcac |
15394068 |
T |
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