View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10455_6 (Length: 503)

Name: NF10455_6
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10455_6
NF10455_6
[»] chr4 (26 HSPs)
chr4 (13-503)||(55120115-55120605)
chr4 (395-503)||(31010404-31010512)
chr4 (395-495)||(51018357-51018456)
chr4 (389-503)||(13498088-13498202)
chr4 (423-503)||(48513643-48513723)
chr4 (428-503)||(52895748-52895823)
chr4 (397-503)||(40988238-40988343)
chr4 (436-502)||(45688768-45688834)
chr4 (460-502)||(52341626-52341668)
chr4 (397-490)||(33803408-33803501)
chr4 (395-503)||(20435767-20435875)
chr4 (397-497)||(32884967-32885066)
chr4 (435-502)||(27839323-27839390)
chr4 (428-503)||(31494671-31494746)
chr4 (436-502)||(36486704-36486770)
chr4 (460-502)||(41956255-41956297)
chr4 (436-502)||(51266949-51267015)
chr4 (457-502)||(31754963-31755008)
chr4 (398-495)||(3684579-3684673)
chr4 (423-502)||(29462826-29462905)
chr4 (460-502)||(34016650-34016692)
chr4 (460-502)||(55669764-55669806)
chr4 (398-503)||(35511160-35511265)
chr4 (397-494)||(52021065-52021161)
chr4 (423-502)||(23260729-23260809)
chr4 (423-495)||(42627104-42627176)
[»] chr8 (11 HSPs)
chr8 (398-503)||(11295444-11295549)
chr8 (423-502)||(38870029-38870108)
chr8 (423-502)||(31596426-31596505)
chr8 (423-503)||(11332799-11332879)
chr8 (423-490)||(24304978-24305045)
chr8 (423-503)||(34421323-34421403)
chr8 (436-502)||(5129474-5129540)
chr8 (395-502)||(7473598-7473705)
chr8 (395-497)||(7532815-7532917)
chr8 (457-502)||(43819563-43819608)
chr8 (457-502)||(45338029-45338074)
[»] chr1 (17 HSPs)
chr1 (389-503)||(43168165-43168279)
chr1 (395-503)||(14331861-14331969)
chr1 (423-503)||(16691318-16691398)
chr1 (423-503)||(44359674-44359754)
chr1 (430-503)||(8892780-8892853)
chr1 (392-502)||(17402973-17403083)
chr1 (393-502)||(27210750-27210859)
chr1 (428-503)||(25177456-25177531)
chr1 (395-502)||(41898834-41898940)
chr1 (457-502)||(26469618-26469663)
chr1 (457-502)||(42607360-42607405)
chr1 (435-502)||(22346251-22346318)
chr1 (428-503)||(48938660-48938734)
chr1 (436-502)||(40845276-40845342)
chr1 (436-502)||(41147493-41147559)
chr1 (436-502)||(52396468-52396533)
chr1 (457-502)||(47655407-47655452)
[»] chr5 (14 HSPs)
chr5 (428-503)||(38610302-38610377)
chr5 (396-502)||(39069256-39069360)
chr5 (428-503)||(39167620-39167694)
chr5 (460-502)||(5151514-5151556)
chr5 (414-502)||(10163622-10163710)
chr5 (394-495)||(17168708-17168809)
chr5 (392-457)||(34278507-34278572)
chr5 (390-502)||(678475-678587)
chr5 (460-503)||(39567927-39567970)
chr5 (436-502)||(1479154-1479220)
chr5 (436-502)||(1759842-1759908)
chr5 (436-502)||(12068192-12068258)
chr5 (398-502)||(3015030-3015134)
chr5 (398-502)||(4293811-4293915)
[»] chr6 (12 HSPs)
chr6 (404-500)||(27127493-27127589)
chr6 (428-503)||(12226341-12226416)
chr6 (423-503)||(29964325-29964405)
chr6 (436-502)||(10855457-10855523)
chr6 (394-503)||(6507365-6507474)
chr6 (460-502)||(7875223-7875265)
chr6 (460-502)||(7880469-7880511)
chr6 (460-502)||(22414633-22414675)
chr6 (436-502)||(29692359-29692425)
chr6 (423-495)||(12775142-12775214)
chr6 (390-502)||(28998956-28999068)
chr6 (467-503)||(34780027-34780063)
[»] chr3 (13 HSPs)
chr3 (395-503)||(51256051-51256158)
chr3 (436-499)||(39436493-39436556)
chr3 (389-503)||(48313809-48313923)
chr3 (395-443)||(2310761-2310809)
chr3 (429-502)||(45899554-45899628)
chr3 (460-502)||(46317511-46317553)
chr3 (398-502)||(34060745-34060850)
chr3 (436-502)||(11675338-11675402)
chr3 (436-502)||(4759868-4759934)
chr3 (436-502)||(36730171-36730237)
chr3 (436-502)||(49976159-49976225)
chr3 (395-495)||(18764-18864)
chr3 (435-495)||(12051070-12051130)
[»] chr2 (18 HSPs)
chr2 (423-501)||(33849012-33849090)
chr2 (396-495)||(11659294-11659393)
chr2 (430-503)||(40798337-40798408)
chr2 (423-502)||(34392556-34392636)
chr2 (423-503)||(12695241-12695323)
chr2 (395-502)||(2805406-2805515)
chr2 (436-502)||(6999227-6999293)
chr2 (436-502)||(17603836-17603902)
chr2 (398-494)||(37230253-37230349)
chr2 (423-502)||(2239607-2239686)
chr2 (423-502)||(9965060-9965139)
chr2 (435-502)||(30831643-30831710)
chr2 (436-502)||(41436503-41436569)
chr2 (474-503)||(16242006-16242035)
chr2 (436-501)||(17118391-17118456)
chr2 (460-497)||(31167624-31167661)
chr2 (415-472)||(34316322-34316378)
chr2 (398-502)||(8327005-8327109)
[»] chr7 (13 HSPs)
chr7 (398-503)||(41769628-41769734)
chr7 (398-503)||(29247947-29248051)
chr7 (398-502)||(40774222-40774326)
chr7 (461-502)||(34835889-34835930)
chr7 (439-502)||(32204207-32204270)
chr7 (436-502)||(5240350-5240416)
chr7 (457-502)||(30388699-30388744)
chr7 (457-497)||(21577682-21577722)
chr7 (397-492)||(28452840-28452935)
chr7 (460-502)||(5348014-5348056)
chr7 (460-502)||(8380466-8380508)
chr7 (436-502)||(42222246-42222312)
chr7 (423-503)||(3720119-3720199)
[»] scaffold0144 (1 HSPs)
scaffold0144 (436-500)||(39614-39678)
[»] scaffold0161 (1 HSPs)
scaffold0161 (395-500)||(8708-8814)


Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 503
Target Start/End: Complemental strand, 55120605 - 55120115
Alignment:
Q  13 aatatgactaaataaaaatgttcttaatacatatgtctttgaatatgtgacgttaaagatgtcaaaattattgattaaatttgtatggacatcaaacgaa 112  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||    
T  55120605 aatatgactaaataaaaatgttcttaatacacatgttttcgaatatgtgacgttaaagatgtcaaaattattgattaaatttgtatagacaccaaacaaa 55120506  T
Q  113 agaattattttaatctaaaccgaataaatgttacaacaagatggaaaaaatcaaacaacaaacagaacaacattgtcacacttagaaattaaatctttaa 212  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55120505 agaattatgttaatctaaaccgaataaatgttgcaacaagacggaaaaaatcaaacaacaaactgaacaacattgtcacacttagaaattaaatctttaa 55120406  T
Q  213 ttttcgagcatagcctaatctttgattaaatctttccaccattgttctccaaaactcaactctcgagtatagcctaaaactttattttacaaagtcaatt 312  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55120405 ttttcgagcatagcctaatatttgattaaatctttccaccattgttctccaaaactcaactctcgagtatagcctaaaactttattttacaaagtcaatt 55120306  T
Q  313 ttcgagcttatagcactaatttatttgaatgacacaagtaactttgtggtgataatttttcttacaaccatataaattttttgggaaatgttaaagagtg 412  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  55120305 ttcgagcttatagcactaatttatttgactgacacaaataactttgtggtgataatttttcttacaagcatataaattttttgggaaatgttaaagaatg 55120206  T
Q  413 tccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    | ||||| |||||| ||||||| ||||||||| ||| |||||| ||||||||  ||||||||||||||||| |||||||||||||||||||    
T  55120205 ttcttaaggtattggttaagatgataaaaattaaaatattgtattgaaaaatagtgaaaaatgaagaatttgactttttaaaagtcaaaac 55120115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 395 - 503
Target Start/End: Original strand, 31010404 - 31010512
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    |||||||| ||||||||| ||||  || |||| ||||||| |||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||||||    
T  31010404 gggaaatgctaaagagtgcccttggagcattggttaagatgataaaaatagaaacattgtattgagaaatgataaaaagtgaagaatttaactttttaaa 31010503  T
Q  495 agtcaaaac 503  Q
    |||||||||    
T  31010504 agtcaaaac 31010512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 395 - 495
Target Start/End: Original strand, 51018357 - 51018456
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    ||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||||||| | ||||||||| |||||| |||||||||||||||||||||    
T  51018357 gggaaatgttaaatagtgtccttaa-gtattggttaagatgataaaaatagaaacattgcattgaaaaatggtgaaaagtgaagaatttaactttttaaa 51018455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 503
Target Start/End: Original strand, 13498088 - 13498202
Alignment:
Q  389 ttttttgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactt 488  Q
    |||| ||||||||| |||||||||||||| | | |||| ||||||| |||||||| |||| |||||| || |||||  | || || || |||||||||||    
T  13498088 ttttatgggaaatgctaaagagtgtccttgatgcattggttaagatgataaaaatagaaatattgtattggaaaatagtaaagaacgatgaatttaactt 13498187  T
Q  489 tttaaaagtcaaaac 503  Q
    |||||||||||||||    
T  13498188 tttaaaagtcaaaac 13498202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 503
Target Start/End: Complemental strand, 48513723 - 48513643
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    |||| ||||||  ||||||||  |||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||    
T  48513723 attggttaagacgataaaaataaaaacattgtattgaaaaatgatgaaaagtgaaagatttaactttttaaaagtcaaaac 48513643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 503
Target Start/End: Complemental strand, 52895823 - 52895748
Alignment:
Q  428 ttaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||| |||||||| ||||||||||| ||| ||||  |||||| |||| | |||||||||||||||||||||||    
T  52895823 ttaagatgataaaaatagaaacattgtattgagaaattgtgaaaagtgaaaattttaactttttaaaagtcaaaac 52895748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 503
Target Start/End: Complemental strand, 40988343 - 40988238
Alignment:
Q  397 gaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaag 496  Q
    ||||| |||||||||| | ||  ||||||| |||| || ||||||||  |||||||||| ||||||| ||| |||| ||||||||| || ||||||||||    
T  40988343 gaaatattaaagagtgcctttggagtattggttaaaatgataaaaataaaaacattgtattgaaaaacgatcaaaagtgaagaatt-aattttttaaaag 40988245  T
Q  497 tcaaaac 503  Q
    |||||||    
T  40988244 tcaaaac 40988238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 45688834 - 45688768
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| ||||||| | | |||||||||||||||| |||  ||||||||||||||||||||||||    
T  45688834 ataaaaatagaaacatagcattgaaaaatgatgaaaagtgataaatttaactttttaaaagtcaaaa 45688768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 52341668 - 52341626
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  52341668 aaaatgatgaaaaatgatgaatttaactttttaaaagtcaaaa 52341626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 490
Target Start/End: Complemental strand, 33803501 - 33803408
Alignment:
Q  397 gaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttt 490  Q
    ||||||||||||| ||||||||| |||||| ||||||  | ||||||  ||| |||||| |||||||| ||||||||| |  ||||||||||||    
T  33803501 gaaatgttaaagaatgtccttaaggtattggttaagaggacaaaaatataaatattgtattgaaaaattatgaaaaataataaatttaactttt 33803408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 503
Target Start/End: Original strand, 20435767 - 20435875
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    ||||||||| |||||||   ||| || ||||| |||| |  |||||||| ||||||||||  || |||||  |||||| |||||||||||||||||||||    
T  20435767 gggaaatgtcaaagagtactcttgaaatattggttaaaaagataaaaatagaaacattgtcttggaaaattgtgaaaagtgaagaatttaactttttaaa 20435866  T
Q  495 agtcaaaac 503  Q
    | |||||||    
T  20435867 aatcaaaac 20435875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 497
Target Start/End: Original strand, 32884967 - 32885066
Alignment:
Q  397 gaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaag 496  Q
    ||||||||||||||||||||||    |||||||||||  | ||||| ||||| |||||| ||| |||||| |||||||| | ||||||||||| ||||||    
T  32884967 gaaatgttaaagagtgtccttaggacattgattaagaagacaaaaaatgaaatattgtattgagaaatgaagaaaaatg-ataatttaactttataaaag 32885065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 27839323 - 27839390
Alignment:
Q  435 aataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||| |||| || | | ||||||||||||||||||||  ||||||| ||||||||||||||||    
T  27839323 aataaaaatagaaatatagcattgaaaaatgatgaaaaatgataaatttaagtttttaaaagtcaaaa 27839390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 503
Target Start/End: Original strand, 31494671 - 31494746
Alignment:
Q  428 ttaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||| |||||||| ||||||||||| |   ||||| |||||| ||||||||||||||||||||| | ||||||    
T  31494671 ttaagatgataaaaatagaaacattgtatttggaaatggtgaaaagtgaagaatttaactttttaaatgacaaaac 31494746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 36486704 - 36486770
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||  ||||||| || || |||||| |||||| |||||||||||| ||||||||||||||||    
T  36486704 ataaaaatataaacattatattggaaaatggtgaaaagtgaagaatttaattttttaaaagtcaaaa 36486770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 41956255 - 41956297
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  41956255 aaaatgatgaaaaatgataaatttaactttttaaaagtcaaaa 41956297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 51267015 - 51266949
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| ||||||||| |||||| |||  ||||||||||||||||||||||||    
T  51267015 ataaaaatagaaatatagtattgaaaaatggtgaaaagtgataaatttaactttttaaaagtcaaaa 51266949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 31755008 - 31754963
Alignment:
Q  457 tgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||    
T  31755008 tgaaaaatgatgaaaagtgataaatttaactttttaaaagtcaaaa 31754963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 495
Target Start/End: Complemental strand, 3684673 - 3684579
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaa 495  Q
    |||||||||| |||||| || || ||||| |||| || ||||||   |||| ||| || ||| ||||||||||||||||  |||||||||||||||||    
T  3684673 aaatgttaaatagtgtctttgaaatattggttaaaatgataaaa---gaaatattatattgagaaatgatgaaaaatgatcaatttaactttttaaaa 3684579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 29462905 - 29462826
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||| ||||||  ||||||||  ||| ||| || |||||||||||||||||||| |||||| | ||||| ||||||||||    
T  29462905 attgtttaagaggataaaaataaaaatattatattgaaaaatgatgaaaaatgaggaattttattttttcaaagtcaaaa 29462826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 34016692 - 34016650
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||| |||||| ||| |||||||||||||||||||||||||    
T  34016692 aaaatggtgaaaagtgatgaatttaactttttaaaagtcaaaa 34016650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 55669806 - 55669764
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||| ||||||||||  ||||||||||||||||||||||||    
T  55669806 aaaatggtgaaaaatgataaatttaactttttaaaagtcaaaa 55669764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 503
Target Start/End: Original strand, 35511160 - 35511265
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    ||||||||| ||||||  |||||  |||| |||||   || ||||| |||| |||||| || |||||| |||||| ||| |||||| |||||||||||||    
T  35511160 aaatgttaaggagtgtttttaaaacattggttaagtagatgaaaatagaaatattgtattggaaaatggtgaaaagtgatgaatttgactttttaaaagt 35511259  T
Q  498 caaaac 503  Q
     |||||    
T  35511260 taaaac 35511265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 494
Target Start/End: Complemental strand, 52021161 - 52021065
Alignment:
Q  397 gaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    ||||||||||| ||||||||||||  |||||||||||| |||| ||| ||||  ||| | |||||||   | ||||||||  ||||||||||||||||    
T  52021161 gaaatgttaaa-agtgtccttaaaacattgattaagatgataagaatagaaattttgcattgaaaaactgtaaaaaatgataaatttaactttttaaa 52021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 23260809 - 23260729
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaa-tgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||| ||||||||  ||| |||| | ||| ||||| ||||||  ||| |||||||||||||||||||| ||||    
T  23260809 attgattaagatgataaaaataaaaatattgcattgagaaatggtgaaaagctgatgaatttaactttttaaaagttaaaa 23260729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 495
Target Start/End: Original strand, 42627104 - 42627176
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaa 495  Q
    |||||||||||| |||||||| |||| |||||  |   ||||| |||| ||||| ||||||||||||||||||    
T  42627104 attgattaagatgataaaaatagaaatattgttttaggaaatggtgaagaatgatgaatttaactttttaaaa 42627176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 398 - 503
Target Start/End: Original strand, 11295444 - 11295549
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    ||||||||||||||||||||||   |||| ||| ||| || |||||  |||||||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  11295444 aaatgttaaagagtgtccttaagacattggttacgatgatgaaaatataaacattgtattgagaaatgatgaaaaatgatgaatttaactttttaaaagt 11295543  T
Q  498 caaaac 503  Q
    ||||||    
T  11295544 caaaac 11295549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 38870108 - 38870029
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||| |||||||| ||||||||| | || ||||||||||||| ||||||||| ||| |||||||||||||||    
T  38870108 attgattaagatgataaaaatagaaacattgcattggaaaatgatgaaaagtgaagaattcaacattttaaaagtcaaaa 38870029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 423 - 502
Target Start/End: Original strand, 31596426 - 31596505
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||| |||||||| |||| |||||  | ||||||| |||||||||| |||||| ||||||||||||||||||    
T  31596426 attgattaagatgataaaaatagaaatattgtgttaaaaaatggtgaaaaatgatgaattttactttttaaaagtcaaaa 31596505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 11332799 - 11332879
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    |||| ||||||  |||||||| |||| |||||| ||| ||||| || ||| ||||||||||||||||||||||||||||||    
T  11332799 attggttaagaagataaaaatagaaatattgtattgagaaatggtgtaaagtgaagaatttaactttttaaaagtcaaaac 11332879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 24305045 - 24304978
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttt 490  Q
    |||||||||||| |||||||| |||| |||||| ||||||| | |||||| |||||||||||||||||    
T  24305045 attgattaagatgataaaaatggaaatattgtattgaaaaacggtgaaaagtgaagaatttaactttt 24304978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 34421323 - 34421403
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    |||| ||||||| |||||||| ||||||||||| |   ||||| ||||||||||| |||| |||||||||||| |||||||    
T  34421323 attggttaagatgataaaaatagaaacattgtatttggaaatggtgaaaaatgaaaaattcaactttttaaaaatcaaaac 34421403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 5129474 - 5129540
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||||||| || | | |||||||||||||||| |||  ||||||| ||||||||||||||||    
T  5129474 ataaaaattgaaatatagcattgaaaaatgatgaaaagtgataaatttaattttttaaaagtcaaaa 5129540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 502
Target Start/End: Complemental strand, 7473705 - 7473598
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    ||||||| |||||||||||||||| || || |||||| | ||||  |||  ||| |||||| |||| |||  |||||||||| | |||| ||||||||||    
T  7473705 gggaaatattaaagagtgtccttagagcatcgattaaaaaaatactaatacaaatattgtattgaataatagtgaaaaatgatgcatttgactttttaaa 7473606  T
Q  495 agtcaaaa 502  Q
    ||| ||||    
T  7473605 agttaaaa 7473598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 497
Target Start/End: Complemental strand, 7532917 - 7532815
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    |||||||| |||||||||| ||||  | |||| |||||   |||||||| |||| |||||| || |||||| |||||| ||| |||||||  ||||||||    
T  7532917 gggaaatgctaaagagtgttcttagggcattggttaaggggataaaaatagaaatattgtattggaaaatggtgaaaagtgatgaatttaggtttttaaa 7532818  T
Q  495 agt 497  Q
    |||    
T  7532817 agt 7532815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 43819608 - 43819563
Alignment:
Q  457 tgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||||||||||  ||||| |||||| ||||||||||||    
T  43819608 tgaaaaatgatgaaaaatgttgaattcaactttctaaaagtcaaaa 43819563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 45338074 - 45338029
Alignment:
Q  457 tgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||| ||||||||||  ||||||||||||||||| ||||||    
T  45338074 tgaaaaatggtgaaaaatgataaatttaactttttaaaaatcaaaa 45338029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 389 - 503
Target Start/End: Complemental strand, 43168279 - 43168165
Alignment:
Q  389 ttttttgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactt 488  Q
    ||||| |||||||| ||||||||| |||||  | |||| ||||||| |||||||| ||||||||||| ||  ||||| |||||| |||||| ||||||||    
T  43168279 tttttagggaaatgctaaagagtgcccttagggcattggttaagatgataaaaatagaaacattgtattgggaaatggtgaaaagtgaagagtttaactt 43168180  T
Q  489 tttaaaagtcaaaac 503  Q
    |||||||||||||||    
T  43168179 tttaaaagtcaaaac 43168165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 395 - 503
Target Start/End: Complemental strand, 14331969 - 14331861
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    |||||||| ||||||||| ||||   | |||| |||| || |||||||| ||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  14331969 gggaaatgctaaagagtgcccttggggcattggttaaaatgataaaaatagaaacattgtattgggaaatggtgaaaaatgaagaatttaactttttaaa 14331870  T
Q  495 agtcaaaac 503  Q
    |||||||||    
T  14331869 agtcaaaac 14331861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 423 - 503
Target Start/End: Complemental strand, 16691398 - 16691318
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    |||| ||||||| |||||||| ||||||||||| ||  ||||| | |||||||||||||||||||||||||||||||||||    
T  16691398 attggttaagatgataaaaatagaaacattgtattgggaaatggtaaaaaatgaagaatttaactttttaaaagtcaaaac 16691318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 44359674 - 44359754
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    |||| ||||||| |||||||| |||||||||||  |  ||||| |||||| ||||||||||||||||||||||||||||||    
T  44359674 attggttaagatgataaaaatagaaacattgtatcgggaaatggtgaaaagtgaagaatttaactttttaaaagtcaaaac 44359754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 503
Target Start/End: Original strand, 8892780 - 8892853
Alignment:
Q  430 aagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||| |||||||| ||||||| ||| || |||||| |||||| | ||||||||||||||||||||||||||||    
T  8892780 aagatgataaaaatagaaacatcgtattggaaaatggtgaaaagtaaagaatttaactttttaaaagtcaaaac 8892853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 502
Target Start/End: Complemental strand, 17403083 - 17402973
Alignment:
Q  392 tttgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaacttttt 491  Q
    ||||||||||||||||||| |  ||||  | |||| |||||   ||||||||| ||| |||||| | ||||||| | |||| ||| ||||||||||||||    
T  17403083 tttgggaaatgttaaagagggctcttagggcattggttaaggggataaaaattaaaatattgtattaaaaaatggtaaaaagtgatgaatttaacttttt 17402984  T
Q  492 aaaagtcaaaa 502  Q
    |||||||||||    
T  17402983 aaaagtcaaaa 17402973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 502
Target Start/End: Complemental strand, 27210859 - 27210750
Alignment:
Q  393 ttgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaacttttta 492  Q
    |||| |||| |||||||||||| |||    |||||||||||  ||||||||  ||  |||||| ||||||||| ||||||||||  ||||||||||||||    
T  27210859 ttggaaaatattaaagagtgtcgttaggacattgattaagaggataaaaataaaactattgtaatgaaaaatggtgaaaaatgatcaatttaacttttta 27210760  T
Q  493 aaagtcaaaa 502  Q
    ||||| ||||    
T  27210759 aaagttaaaa 27210750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 503
Target Start/End: Original strand, 25177456 - 25177531
Alignment:
Q  428 ttaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||| |||||| | || |||||||| ||| ||||  |||||||||||||| |||| |||||||||||||||||    
T  25177456 ttaagatgataaaattagatacattgtattgagaaatagtgaaaaatgaagaaattaattttttaaaagtcaaaac 25177531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 502
Target Start/End: Original strand, 41898834 - 41898940
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    ||||||||||||||||||| ||||     ||| |||||| |||| |||| |||| |||||| ||||||||| | |||| ||| |||||||||||||||||    
T  41898834 gggaaatgttaaagagtgttcttaggacgttggttaaga-aatacaaatagaaatattgtattgaaaaatggtaaaaagtgatgaatttaactttttaaa 41898932  T
Q  495 agtcaaaa 502  Q
    ||| ||||    
T  41898933 agttaaaa 41898940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 26469618 - 26469663
Alignment:
Q  457 tgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||    
T  26469618 tgaaaaataatgaaaaatgataaatttaactttttaaaagtcaaaa 26469663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 42607360 - 42607405
Alignment:
Q  457 tgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||    
T  42607360 tgaaaaatggtgaaaaatgataaatttaactttttaaaagtcaaaa 42607405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 22346251 - 22346318
Alignment:
Q  435 aataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||| |||| || ||| ||||||||| |||||| |||  ||||||| ||||||||||||||||    
T  22346251 aataaaaatagaaatatagtattgaaaaatggtgaaaagtgataaatttaattttttaaaagtcaaaa 22346318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 503
Target Start/End: Complemental strand, 48938734 - 48938660
Alignment:
Q  428 ttaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||| |||||||| |||| |||||| |  |||||| |||||| |||| |||||| ||||||||||||||||||    
T  48938734 ttaagatgataaaaatagaaatattgtattagaaaatggtgaaaagtgaaaaattta-ctttttaaaagtcaaaac 48938660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 40845342 - 40845276
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| ||||||||| |||||| |||  ||||||||||||||||| ||||||    
T  40845342 ataaaaatagaaatatagtattgaaaaatggtgaaaagtgataaatttaactttttaaaaatcaaaa 40845276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 41147493 - 41147559
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || | | ||||||||| | ||||||||  ||||||||||||||||||||||||    
T  41147493 ataaaaatagaaatatagcattgaaaaatggtaaaaaatgattaatttaactttttaaaagtcaaaa 41147559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 52396533 - 52396468
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| ||||||||||| |||| |||  ||||||||||||||||||||||||    
T  52396533 ataaaaatagaaatatagtattgaaaaatgat-aaaagtgataaatttaactttttaaaagtcaaaa 52396468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 47655407 - 47655452
Alignment:
Q  457 tgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||| |||||| |||  ||||||||||||||||||||||||    
T  47655407 tgaaaaatggtgaaaattgataaatttaactttttaaaagtcaaaa 47655452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 428 - 503
Target Start/End: Original strand, 38610302 - 38610377
Alignment:
Q  428 ttaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||| |||||||| ||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  38610302 ttaagatgataaaaatagaaacattgcattgaaaaatgataaaaagtgaagaatttaactttttaaaagtcaaaac 38610377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 502
Target Start/End: Original strand, 39069256 - 39069360
Alignment:
Q  396 ggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaa 495  Q
    |||||||||||||||||||||| | | |||| ||||||| ||||| |  | ||||||||| || |||||  |||||| ||| ||||||||| ||||||||    
T  39069256 ggaaatgttaaagagtgtccttgaggcattggttaagatgataaata--ggaacattgtattggaaaattgtgaaaagtgatgaatttaacattttaaaa 39069353  T
Q  496 gtcaaaa 502  Q
    |||||||    
T  39069354 gtcaaaa 39069360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 503
Target Start/End: Complemental strand, 39167694 - 39167620
Alignment:
Q  428 ttaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||| |||||||| ||||||||||| || |||||| |||||| | || ||||||||||||||||| |||||||    
T  39167694 ttaagatgataaaaatagaaacattgtattggaaaatggtgaaaagt-aaaaatttaactttttaaaaatcaaaac 39167620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 5151556 - 5151514
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  5151556 aaaatgatgaaaaatgataaatttaactttttaaaagtcaaaa 5151514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 502
Target Start/End: Original strand, 10163622 - 10163710
Alignment:
Q  414 ccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatga-tgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||| ||| |||| ||||||| ||||||||  |||||| ||| ||||||| |  |||||| |||||||||||||||||||||||||||||    
T  10163622 ccttgaagcattggttaagatgataaaaataaaaacat-gtattgaaaaaagggtgaaaagtgaagaatttaactttttaaaagtcaaaa 10163710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 495
Target Start/End: Complemental strand, 17168809 - 17168708
Alignment:
Q  394 tgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaa 493  Q
    ||||||||| |||||||||  ||||| | |||| ||||||  ||| |||| |||| |||| | ||||||| | |||||||||| |||||| |||||||||    
T  17168809 tgggaaatgctaaagagtgcacttaaggcattggttaagaagatacaaatagaaatattgcattgaaaaacggtgaaaaatgatgaatttgactttttaa 17168710  T
Q  494 aa 495  Q
    ||    
T  17168709 aa 17168708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 34278507 - 34278572
Alignment:
Q  392 tttgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtact 457  Q
    ||||||||||||||||||||| |||||||| |||| ||||||  |||||| | |||| ||||||||    
T  34278507 tttgggaaatgttaaagagtgcccttaaagaattggttaagaggataaaattagaaatattgtact 34278572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 502
Target Start/End: Complemental strand, 678587 - 678475
Alignment:
Q  390 tttttgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaacttt 489  Q
    ||||||||||||| | ||||||| |||||||| |||| ||||||  | |||||| |||   ||||| || |||||| |||||| | | ||||||||| ||    
T  678587 tttttgggaaatgctgaagagtgcccttaaagcattggttaagaggacaaaaatagaattgttgtattggaaaatggtgaaaagtaatgaatttaacctt 678488  T
Q  490 ttaaaagtcaaaa 502  Q
    |||||||| ||||    
T  678487 ttaaaagttaaaa 678475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 503
Target Start/End: Complemental strand, 39567970 - 39567927
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    |||||||||||||||||  ||||||||||||||||| |||||||    
T  39567970 aaaatgatgaaaaatgataaatttaactttttaaaaatcaaaac 39567927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 1479154 - 1479220
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || | | |||||||| ||||||| |||  ||||||||||||||||||||||||    
T  1479154 ataaaaatagaaatatagcattgaaaaataatgaaaagtgataaatttaactttttaaaagtcaaaa 1479220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 1759908 - 1759842
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| |||||||||  ||||| |||  ||||||||||||||||||||||||    
T  1759908 ataaaaatagaaatatagtattgaaaaatggagaaaagtgataaatttaactttttaaaagtcaaaa 1759842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 12068192 - 12068258
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| || |||||| |||||| |||  ||||||||||||||||||||||||    
T  12068192 ataaaaatagaaatatagtattggaaaatggtgaaaagtgataaatttaactttttaaaagtcaaaa 12068258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 502
Target Start/End: Original strand, 3015030 - 3015134
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    ||||| ||||||||| |||||||| ||   ||||||| |||||||| |||| |||||  |  |||||  || |||||||  |||||||||||||||||||    
T  3015030 aaatgctaaagagtgcccttaaagcatctgttaagatgataaaaatagaaatattgtgttagaaaatagtgtaaaatgattaatttaactttttaaaagt 3015129  T
Q  498 caaaa 502  Q
     ||||    
T  3015130 taaaa 3015134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 502
Target Start/End: Original strand, 4293811 - 4293915
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    |||||||||||||||| ||||  | |||| |||| |  |||||||| | || |||||| ||| ||||||| || | |   ||||||||||||||||||||    
T  4293811 aaatgttaaagagtgttcttagggcattggttaaaaggataaaaatagtaatattgtattgagaaatgataaagagtagtgaatttaactttttaaaagt 4293910  T
Q  498 caaaa 502  Q
    |||||    
T  4293911 caaaa 4293915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 404 - 500
Target Start/End: Original strand, 27127493 - 27127589
Alignment:
Q  404 taaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaa 500  Q
    |||||||||||| | | | |||| ||||||| |||||||| |||| |||||| ||| ||||| |||||||||| |||||||||||||||||||||||    
T  27127493 taaagagtgtccatgatgcattgtttaagatgataaaaatagaaatattgtattgagaaatggtgaaaaatgatgaatttaactttttaaaagtcaa 27127589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 428 - 503
Target Start/End: Original strand, 12226341 - 12226416
Alignment:
Q  428 ttaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||| |||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||| ||||| |||||    
T  12226341 ttaagatgataaaaatagaaacattgtattgagaaatgattaaaagtgaagaatttaactttttgaaagtaaaaac 12226416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 423 - 503
Target Start/End: Complemental strand, 29964405 - 29964325
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||| ||| |||||||||||  | |||||||| ||| ||||| |||||||| || |||||||||||||||||||||||||    
T  29964405 attgactaaaataataaaaatatagacattgtattgagaaatggtgaaaaataaataatttaactttttaaaagtcaaaac 29964325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 10855523 - 10855457
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| ||  || |||||||||||||||| |||  ||||||||||||||||||||||||    
T  10855523 ataaaaatagaaatataatattgaaaaatgatgaaaagtgataaatttaactttttaaaagtcaaaa 10855457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 503
Target Start/End: Original strand, 6507365 - 6507474
Alignment:
Q  394 tgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaa 493  Q
    ||||||||| |||| |||||||||   ||| || ||||||| |||||||| ||||| ||| | ||  ||||  |||||| |||| |||||||||||||||    
T  6507365 tgggaaatgctaaatagtgtccttggggtaatggttaagatgataaaaatagaaactttgcattgggaaatattgaaaagtgaaaaatttaactttttaa 6507464  T
Q  494 aagtcaaaac 503  Q
    || |||||||    
T  6507465 aaatcaaaac 6507474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 7875223 - 7875265
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||||||| |||  ||||||||||||||||||||||||    
T  7875223 aaaatgatgaaaagtgataaatttaactttttaaaagtcaaaa 7875265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 7880469 - 7880511
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||||||| |||  ||||||||||||||||||||||||    
T  7880469 aaaatgatgaaaagtgataaatttaactttttaaaagtcaaaa 7880511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 22414633 - 22414675
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||||| || || ||||||||||||||||||||||    
T  22414633 aaaatgatgaaaaaagatgattttaactttttaaaagtcaaaa 22414675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 29692359 - 29692425
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| ||||||||| |||||| |||  ||||||||||||||| ||||||||    
T  29692359 ataaaaatagaaatatagtattgaaaaatggtgaaaagtgataaatttaactttttaagagtcaaaa 29692425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 495
Target Start/End: Complemental strand, 12775214 - 12775142
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaa 495  Q
    |||| ||||||  ||||||||  ||| |||||| | |||| |||||||||||||  |||||||||||||||||    
T  12775214 attggttaagaggataaaaatataaatattgtattaaaaactgatgaaaaatgattaatttaactttttaaaa 12775142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 502
Target Start/End: Complemental strand, 28999068 - 28998956
Alignment:
Q  390 tttttgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaacttt 489  Q
    |||| ||||||||| |||||||| |||||    ||||||||||| ||| ||||| |||| | |||| || |||||| |||||| |   || || ||||||    
T  28999068 ttttagggaaatgtcaaagagtgcccttaggacattgattaagagaattaaaatagaaaaaatgtattggaaaatggtgaaaagttgtgatttcaacttt 28998969  T
Q  490 ttaaaagtcaaaa 502  Q
    |||||||||||||    
T  28998968 ttaaaagtcaaaa 28998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 503
Target Start/End: Original strand, 34780027 - 34780063
Alignment:
Q  467 tgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    |||||| |||||||||||||||||||||||| |||||    
T  34780027 tgaaaagtgaagaatttaactttttaaaagttaaaac 34780063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 503
Target Start/End: Original strand, 51256051 - 51256158
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    |||||||| ||||||||| ||||| || |||||||||||| |||| |||  |||||||||| ||  ||| |||||||| ||||||| |||||||||||||    
T  51256051 gggaaatgctaaagagtgcccttagagcattgattaagatgataacaatataaacattgtattgggaaacgatgaaaagtgaagaa-ttaactttttaaa 51256149  T
Q  495 agtcaaaac 503  Q
    |||||||||    
T  51256150 agtcaaaac 51256158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 436 - 499
Target Start/End: Complemental strand, 39436556 - 39436493
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtca 499  Q
    |||||||| |||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  39436556 ataaaaatagaaatattgtattgaaaaatggtgaaaaataaagaatttaactttttaaaagtca 39436493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 503
Target Start/End: Original strand, 48313809 - 48313923
Alignment:
Q  389 ttttttgggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactt 488  Q
    |||| ||| |||||||||||| |||| ||   | |||||||||||| |||||||| ||||||||||| ||  ||||| ||||||  ||| ||||| ||||    
T  48313809 ttttatggaaaatgttaaagattgtctttggggcattgattaagatcataaaaatagaaacattgtattgggaaatggtgaaaagcgaaaaatttgactt 48313908  T
Q  489 tttaaaagtcaaaac 503  Q
    ||||||| |||||||    
T  48313909 tttaaaaatcaaaac 48313923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 2310809 - 2310761
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaat 443  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  2310809 gggaaatgttaaagagtgtccttaaagcattgattaagagaattaaaat 2310761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 502
Target Start/End: Original strand, 45899554 - 45899628
Alignment:
Q  429 taagataataaaaattgaaacattgtactgaaaaatgatgaaaaa-tgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||| ||||||||| |||| ||| || || |||||||||||||| ||| |||||||| ||||||||||||||||    
T  45899554 taagagaataaaaatagaaatattatattggaaaatgatgaaaaagtgatgaatttaaatttttaaaagtcaaaa 45899628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 46317553 - 46317511
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  46317553 aaaatgatgaaaaatgataaatttaactttttaaaagtcaaaa 46317511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 502
Target Start/End: Original strand, 34060745 - 34060850
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaac-attgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaag 496  Q
    ||||| ||||||||||||||   | |||| ||||||  ||||||| | |||  |||||| ||||||||| |||||| ||| |||||||||||||||||||    
T  34060745 aaatgctaaagagtgtccttggtgcattggttaagaagataaaaaataaaaatattgtattgaaaaatggtgaaaagtgatgaatttaactttttaaaag 34060844  T
Q  497 tcaaaa 502  Q
    | ||||    
T  34060845 ttaaaa 34060850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 11675402 - 11675338
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| |||||| ||||||||| |  ||||||| ||||||||||||||||| |||||||    
T  11675402 ataaaaatagaaatattgtattgaaaaatggt--aaaatgacgaatttaactttttaaatgtcaaaa 11675338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 4759868 - 4759934
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || | | ||||||||| |||||| |||  ||||||||||||||||||||||||    
T  4759868 ataaaaatagaaatatagcattgaaaaatggtgaaaagtgataaatttaactttttaaaagtcaaaa 4759934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 36730171 - 36730237
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||  ||| || ||| ||||||||| |||||| |||  ||||||||||||||||||||||||    
T  36730171 ataaaaatataaatatagtattgaaaaatggtgaaaagtgataaatttaactttttaaaagtcaaaa 36730237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 49976159 - 49976225
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||  |||||| |||  |||| |||||| ||| |||||||||||||||||||||||||    
T  49976159 ataaaaatagaattattgtattgactaatggtgaaaagtgatgaatttaactttttaaaagtcaaaa 49976225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 495
Target Start/End: Original strand, 18764 - 18864
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    |||||||| ||||||||| |||||  | |||| ||||||  |||||||| |||| |||| | ||  ||| | |||||| ||| |||||||||||||||||    
T  18764 gggaaatgctaaagagtgcccttagggcattggttaagaggataaaaatagaaatattgcattgggaaacggtgaaaagtgatgaatttaactttttaaa 18863  T
Q  495 a 495  Q
    |    
T  18864 a 18864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 495
Target Start/End: Complemental strand, 12051130 - 12051070
Alignment:
Q  435 aataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaa 495  Q
    ||||||||| |||| || ||| || ||||| |||||||||||  |||||||||||||||||    
T  12051130 aataaaaatagaaatatagtattgtaaaataatgaaaaatgataaatttaactttttaaaa 12051070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 33849090 - 33849012
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaa 501  Q
    |||||||||||| |||||||| |||||||| || ||| ||||| |||||||  ||||||||||||||||||||||||||    
T  33849090 attgattaagatgataaaaatagaaacattatattgataaatggtgaaaaaccaagaatttaactttttaaaagtcaaa 33849012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 495
Target Start/End: Complemental strand, 11659393 - 11659294
Alignment:
Q  396 ggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaa 495  Q
    ||||||||||||||||| ||||  || |||  ||||||  ||||||||  ||| |||||| ||||||||  |||||| ||||||||||||||||||||||    
T  11659393 ggaaatgttaaagagtgcccttggagcattcgttaagaggataaaaataaaaatattgtattgaaaaatagtgaaaagtgaagaatttaactttttaaaa 11659294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 503
Target Start/End: Original strand, 40798337 - 40798408
Alignment:
Q  430 aagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||| |||||||| ||||||||||| || |||||  |||||| ||||| ||||||||||||||||||||||||    
T  40798337 aagatgataaaaatagaaacattgtattggaaaat--tgaaaagtgaaggatttaactttttaaaagtcaaaac 40798408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 502
Target Start/End: Original strand, 34392556 - 34392636
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtact-gaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||||||  |||||||| ||| ||||||| | | |||||| | ||||||||||||||||| ||||||||||||||||    
T  34392556 attgattaagaagataaaaatagaatcattgtaattggaaaatggttaaaaatgaagaatttaattttttaaaagtcaaaa 34392636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 12695241 - 12695323
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatg--aaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    |||| ||||||| |||||||| ||||||||||| || |||||| ||  |||| | |||||||||||||||||||| |||||||    
T  12695241 attggttaagatgataaaaatagaaacattgtattggaaaatggtgtgaaaagtaaagaatttaactttttaaaaatcaaaac 12695323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 502
Target Start/End: Complemental strand, 2805515 - 2805406
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaact--tttta 492  Q
    |||||||||||||||||||||| ||   |||| ||||||  ||||||||  ||  |||||| |||||||| || |||| ||| ||||||||||  |||||    
T  2805515 gggaaatgttaaagagtgtcctgaagacattggttaagaggataaaaatataagtattgtattgaaaaataattaaaagtgatgaatttaacttttttta 2805416  T
Q  493 aaagtcaaaa 502  Q
    ||||||||||    
T  2805415 aaagtcaaaa 2805406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 6999293 - 6999227
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| || |||||| ||||||||||  ||||||||||||||||||||||||    
T  6999293 ataaaaatagaaatatagtattggaaaatggtgaaaaatgataaatttaactttttaaaagtcaaaa 6999227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 17603902 - 17603836
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || | | ||||||||||| ||||||||  ||||||||||||||||||||||||    
T  17603902 ataaaaatagaaatatagcattgaaaaatgataaaaaatgataaatttaactttttaaaagtcaaaa 17603836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 494
Target Start/End: Complemental strand, 37230349 - 37230253
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaa 494  Q
    ||||||||||||||||| |||| | |||| |||| |  |||| ||| |||| |||||| ||||||||| |||||| |||  || |||||||||||||    
T  37230349 aaatgttaaagagtgtcattaaggcattggttaatagcataagaatagaaatattgtattgaaaaatggtgaaaagtgataaacttaactttttaaa 37230253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 2239686 - 2239607
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||| ||||||  ||||| || |||| |||| | ||||||||| | |||||||| |||||||||||||||||||| ||||    
T  2239686 attggttaagaggataaagatagaaatattgcaatgaaaaatggtaaaaaatgatgaatttaactttttaaaagttaaaa 2239607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 502
Target Start/End: Original strand, 9965060 - 9965139
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||| | ||| ||||| |||| | | || ||| ||||| |||||||| | |||||||||||||||||||||||||    
T  9965060 attgattaaaagaattaaaatagaaaaaatatattgagaaatggtgaaaaattatgaatttaactttttaaaagtcaaaa 9965139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 502
Target Start/End: Complemental strand, 30831710 - 30831643
Alignment:
Q  435 aataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||| |||| |||| | | |||||| || |||||||| |||||||||||||||||||| ||||    
T  30831710 aataaaaatagaaatattgcattaaaaaattataaaaaatgatgaatttaactttttaaaagtaaaaa 30831643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 41436569 - 41436503
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||  ||| || ||| |||||||||||||||| |||  || |||||||||||||||||||||    
T  41436569 ataaaaataaaaatatagtattgaaaaatgatgaaaagtgataaacttaactttttaaaagtcaaaa 41436503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 503
Target Start/End: Original strand, 16242006 - 16242035
Alignment:
Q  474 tgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||||||||||||||||||||||||||    
T  16242006 tgaagaatttaactttttaaaagtcaaaac 16242035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 501
Target Start/End: Original strand, 17118391 - 17118456
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaa 501  Q
    |||||||| |||| ||  ||||| |||||| ||||||||||  ||||||||||||||||| |||||    
T  17118391 ataaaaatagaaatataatactggaaaatgttgaaaaatgataaatttaactttttaaaactcaaa 17118456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 31167661 - 31167624
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  31167661 aaaatgatgaaaattgatgaatttaactttttaaaagt 31167624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 34316322 - 34316378
Alignment:
Q  415 cttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaa 472  Q
    ||||| |||||||| |||||||||||||| |||| |||||| ||||||||| ||||||    
T  34316322 cttaaggtattgat-aagataataaaaatagaaatattgtattgaaaaatggtgaaaa 34316378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 502
Target Start/End: Complemental strand, 8327109 - 8327005
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    |||| |||||||||||| ||| |  |||| ||||||  ||||||||  ||| ||||   ||| |||| ||||||| |||| |||||||||||||||||||    
T  8327109 aaatattaaagagtgtctttagatcattggttaagaggataaaaataaaaatattgctttgagaaataatgaaaagtgaaaaatttaactttttaaaagt 8327010  T
Q  498 caaaa 502  Q
     ||||    
T  8327009 taaaa 8327005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 503
Target Start/End: Original strand, 41769628 - 41769734
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaacttt-ttaaaag 496  Q
    ||||||||||||||| ||||  || |||| ||||||| |||||||| |||||||| || | ||||||| |||||| || ||||||||| ||| |||||||    
T  41769628 aaatgttaaagagtgcccttggagcattggttaagatgataaaaatagaaacattatattaaaaaatggtgaaaagtggagaatttaattttattaaaag 41769727  T
Q  497 tcaaaac 503  Q
    |||||||    
T  41769728 tcaaaac 41769734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 503
Target Start/End: Complemental strand, 29248051 - 29247947
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    ||||| |||| |||||| ||  || |||||||||||| |||||||| ||||||||  | || |||| |||||||| ||||||| ||||||||||||||||    
T  29248051 aaatgataaaaagtgtctttggagcattgattaagatgataaaaatagaaacattacattggaaaacgatgaaaagtgaagaa-ttaactttttaaaagt 29247953  T
Q  498 caaaac 503  Q
    ||||||    
T  29247952 caaaac 29247947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 502
Target Start/End: Original strand, 40774222 - 40774326
Alignment:
Q  398 aaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    ||||||||||||||||| ||     |||||||||||  ||| |||| |||| |||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  40774222 aaatgttaaagagtgtcattgggacattgattaagaagatacaaatagaaatattgcattgaaaaatgatgaaaattgatgaatttaactttttaaaagt 40774321  T
Q  498 caaaa 502  Q
     ||||    
T  40774322 taaaa 40774326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 502
Target Start/End: Complemental strand, 34835930 - 34835889
Alignment:
Q  461 aaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  34835930 aaatgatgaaaaatgaagaatttaactttttaaaagttaaaa 34835889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 502
Target Start/End: Complemental strand, 32204270 - 32204207
Alignment:
Q  439 aaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||| |||| |||| | |||||||||||||||| ||| |||||||||||||||||||| ||||    
T  32204270 aaaatagaaatattgcattgaaaaatgatgaaaagtgatgaatttaactttttaaaagttaaaa 32204207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 502
Target Start/End: Original strand, 5240350 - 5240416
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| ||||||||| |||||| |||  ||||||||||||||||||||||||    
T  5240350 ataaaaatagaaatatagtattgaaaaatggtgaaaagtgataaatttaactttttaaaagtcaaaa 5240416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 30388699 - 30388744
Alignment:
Q  457 tgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||    
T  30388699 tgaaaaatggtgaaaaatgataaatttaactttttaaaagtcaaaa 30388744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 497
Target Start/End: Original strand, 21577682 - 21577722
Alignment:
Q  457 tgaaaaatgatgaaaaatgaagaatttaactttttaaaagt 497  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  21577682 tgaaaaatggtgaaaaatgaataatttaactttttaaaagt 21577722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 492
Target Start/End: Complemental strand, 28452935 - 28452840
Alignment:
Q  397 gaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaacttttta 492  Q
    |||||| |||||| |||||||||   ||||||||| | |||| |||| |||| | |||||||||||||| || ||| | | |||||||||||||||    
T  28452935 gaaatgctaaagaatgtccttaacacattgattaacagaatataaatagaaatactgtactgaaaaatggtggaaagttatgaatttaacttttta 28452840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 5348014 - 5348056
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||||||| |||  ||||||||||||||||||||||||    
T  5348014 aaaatgatgaaaagtgataaatttaactttttaaaagtcaaaa 5348056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 8380508 - 8380466
Alignment:
Q  460 aaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    ||||||||||||| |||  ||||||||||||||||||||||||    
T  8380508 aaaatgatgaaaagtgataaatttaactttttaaaagtcaaaa 8380466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 502
Target Start/End: Complemental strand, 42222312 - 42222246
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaa 502  Q
    |||||||| |||| || ||| || |||||| |||||| |||  ||||||||||||||||||||||||    
T  42222312 ataaaaatagaaatatggtattggaaaatggtgaaaagtgataaatttaactttttaaaagtcaaaa 42222246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 3720119 - 3720199
Alignment:
Q  423 attgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaaaac 503  Q
    ||||||||| || |||||||| | || |||| | ||| ||||| || |||||||  ||||||||||||||||||| |||||    
T  3720119 attgattaaaatgataaaaatagtaatattgcattgacaaatggtgtaaaatgataaatttaactttttaaaagttaaaac 3720199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 39678 - 39614
Alignment:
Q  436 ataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaactttttaaaagtcaa 500  Q
    |||||||| ||||||||||| || |||||  |||||| |||||||||||||||||||||||||||    
T  39678 ataaaaatagaaacattgtattggaaaatagtgaaaactgaagaatttaactttttaaaagtcaa 39614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 500
Target Start/End: Original strand, 8708 - 8814
Alignment:
Q  395 gggaaatgttaaagagtgtccttaaagtattgattaagataataaaaattgaaacattgtactgaaaaatgatgaaaaatgaagaatttaac-tttttaa 493  Q
    |||||||||||||||| | ||||   | || ||||| ||  ||| ||||||||  |||||| |  ||||||||||||||||| ||||||||| |||||||    
T  8708 gggaaatgttaaagagcgcccttggggcatagattaggaggatagaaattgaataattgtattagaaaatgatgaaaaatgatgaatttaacttttttaa 8807  T
Q  494 aagtcaa 500  Q
    |||||||    
T  8808 aagtcaa 8814  T

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