View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10455_7 (Length: 470)

Name: NF10455_7
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10455_7
NF10455_7
[»] chr6 (4 HSPs)
chr6 (191-470)||(414875-415154)
chr6 (1-133)||(414660-414792)
chr6 (224-305)||(404717-404798)
chr6 (203-288)||(400574-400659)
[»] chr7 (2 HSPs)
chr7 (191-281)||(12217186-12217276)
chr7 (356-408)||(4017809-4017861)
[»] chr3 (1 HSPs)
chr3 (351-408)||(15864820-15864877)
[»] chr8 (1 HSPs)
chr8 (364-408)||(34863481-34863525)
[»] chr5 (1 HSPs)
chr5 (364-420)||(2703468-2703524)
[»] chr2 (1 HSPs)
chr2 (345-408)||(37986759-37986823)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 191 - 470
Target Start/End: Original strand, 414875 - 415154
Alignment:
Q  191 tagacgatgattacagtttgtgaggcgcgcgaggaggatggattctccgaaggtgatgtcttgatttttcctgaaatgattaaatacaggtatgttatta 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  414875 tagacgatgattacagtttgtgaggcgcgcgaggaggatggattctccgaaggtgatgtcttgatttttcctgaaatgattaaatacaggtatgttatta 414974  T
Q  291 aaaaactaaaccattgttgtaatctacgaatcacttgacatatgtaagaactttggacacgacatgacacgtcgacacggataactatttgaaaaaacga 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  414975 aaaaactaaaccattgttgtaatctacgaatcacttgacatatgtaagaactttggacacgacatgacacgtcgacacggataactatttgaaaaaacga 415074  T
Q  391 tataattgaatgtaatcaaatatgtgagtgacatgtgttagactcgggacacactttcgatcaaacggggttggtgctac 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  415075 tataattgaatgtaatcaaatatgtgagtgacatgtgttagactcgggacacactttcgatcaaacggggttggtgctac 415154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 414660 - 414792
Alignment:
Q  1 gtataactaacacctctgatcgaagttgtgtctagtgtctgacatgtgttagtgtgtgattcannnnnnnaaattattaccggtttgtgtgaacgtgtta 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  414660 gtataactaacacctctgatcgaagttgtgtctggtgtctgacatgtgttagtgtgtgattcatttttttaaattattaccggtttgtgtgaacgtgtta 414759  T
Q  101 gtgtcagtgacttgtctctattggtgcttcata 133  Q
    |||||||||||||||||||||||||||||||||    
T  414760 gtgtcagtgacttgtctctattggtgcttcata 414792  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 404717 - 404798
Alignment:
Q  224 gaggatggattctccgaaggtgatgtcttgatttttcctgaaatgattaaatacaggtatgttattaaaaaactaaaccatt 305  Q
    |||||||| |||||||| || || ||||||||||| || |||||||| ||||||| ||||||||||| |||| |||||||||    
T  404717 gaggatggcttctccgacggagacgtcttgattttcccagaaatgatcaaatacaagtatgttattacaaaagtaaaccatt 404798  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 400659 - 400574
Alignment:
Q  203 acagtttgtgaggcgcgcgaggaggatggattctccgaaggtgatgtcttgatttttcctgaaatgattaaatacaggtatgttat 288  Q
    |||||||||||| ||   || |||||||| |||||||| || || ||||||||||| || |||||||| ||||||| |||| ||||    
T  400659 acagtttgtgagacgattgaagaggatggcttctccgacggcgacgtcttgattttcccagaaatgatcaaatacaagtatattat 400574  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 12217276 - 12217186
Alignment:
Q  191 tagacgatgattacagtttgtgaggcgcgcgaggaggatggattctccgaaggtgatgtcttgatttttcctgaaatgattaaatacaggt 281  Q
    |||||||  ||||| || ||||| ||| | ||||| ||||||||||| || ||||| || |||||||| || |||||| ||||||||||||    
T  12217276 tagacgaaaattactgtgtgtgaagcgagtgaggaagatggattctctgacggtgacgttttgattttcccggaaatggttaaatacaggt 12217186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 4017861 - 4017809
Alignment:
Q  356 gacacgtcgacacggataactatttgaaaaaacgatataattgaatgtaatca 408  Q
    |||||| ||||||||||||  |||||| |||||||||||||| | ||||||||    
T  4017861 gacacgccgacacggataataatttgagaaaacgatataatttagtgtaatca 4017809  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 15864820 - 15864877
Alignment:
Q  351 gacatgacacgtcgacacggataactatttgaaaaaacgatataattgaatgtaatca 408  Q
    |||| |||||| ||||||||||||  ||||||||||| ||||||||| | ||||||||    
T  15864820 gacacgacacgccgacacggataataatttgaaaaaatgatataatttagtgtaatca 15864877  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 34863481 - 34863525
Alignment:
Q  364 gacacggataactatttgaaaaaacgatataattgaatgtaatca 408  Q
    ||||||||||| |||||||||||| ||  ||||||||||||||||    
T  34863481 gacacggataattatttgaaaaaatgacttaattgaatgtaatca 34863525  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 2703524 - 2703468
Alignment:
Q  364 gacacggataactatttgaaaaaacgatataattgaatgtaatcaaatatgtgagtg 420  Q
    ||||| |||||  ||||||||||| || | ||||||||||||||| |||||||||||    
T  2703524 gacaccgataagcatttgaaaaaatgacacaattgaatgtaatcatatatgtgagtg 2703468  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 37986759 - 37986823
Alignment:
Q  345 ggacacgaca-tgacacgtcgacacggataactatttgaaaaaacgatataattgaatgtaatca 408  Q
    |||||||||| ||||||| |||||| |||||  ||||||||||| |||||| |||| ||||||||    
T  37986759 ggacacgacactgacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatca 37986823  T

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