View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10455_9 (Length: 344)

Name: NF10455_9
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10455_9
NF10455_9
[»] chr1 (32 HSPs)
chr1 (1-334)||(15035885-15036218)
chr1 (176-334)||(15031066-15031224)
chr1 (133-334)||(14533659-14533860)
chr1 (118-334)||(15009694-15009910)
chr1 (118-334)||(15030792-15031008)
chr1 (20-253)||(14503010-14503243)
chr1 (118-334)||(15023811-15024027)
chr1 (176-334)||(15009968-15010126)
chr1 (184-334)||(15024021-15024171)
chr1 (176-334)||(15031210-15031368)
chr1 (184-334)||(15031362-15031512)
chr1 (184-304)||(15001157-15001277)
chr1 (178-333)||(14533804-14533959)
chr1 (139-273)||(14523455-14523589)
chr1 (149-334)||(15024130-15024315)
chr1 (149-334)||(15031471-15031656)
chr1 (36-215)||(14481461-14481640)
chr1 (1-166)||(14534043-14534208)
chr1 (133-272)||(14533577-14533716)
chr1 (176-334)||(15016155-15016313)
chr1 (271-334)||(15001100-15001163)
chr1 (176-218)||(15010184-15010226)
chr1 (177-262)||(15036205-15036290)
chr1 (267-303)||(15009915-15009951)
chr1 (267-303)||(15031013-15031049)
chr1 (277-334)||(15016112-15016169)
chr1 (267-303)||(15010131-15010167)
chr1 (176-218)||(15024301-15024343)
chr1 (176-218)||(15031642-15031684)
chr1 (262-316)||(15039875-15039929)
chr1 (208-273)||(15039972-15040037)
chr1 (184-216)||(15001299-15001331)
[»] scaffold0400 (5 HSPs)
scaffold0400 (1-304)||(11356-11659)
scaffold0400 (141-303)||(11640-11802)
scaffold0400 (133-287)||(11776-11930)
scaffold0400 (45-273)||(5544-5772)
scaffold0400 (177-218)||(11964-12005)
[»] scaffold0365 (5 HSPs)
scaffold0365 (1-304)||(11999-12302)
scaffold0365 (141-303)||(12283-12445)
scaffold0365 (133-287)||(12419-12573)
scaffold0365 (45-273)||(6188-6416)
scaffold0365 (177-218)||(12607-12648)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 15035885 - 15036218
Alignment:
Q  1 ttgagcaatttacattatctttacctttatcaaaaccatctcattggtagcattcccaatgaatttggaaaactttattccctttcgacaatccaattgt 100  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||||||||    
T  15035885 ttgagcaatttatattatctttacctttattcaaaccatctcattggtagcattccaaatgaattaggaaagctctattccctttccacaatccaattgt 15035984  T
Q  101 tagaaaacaacctttcagggtcaatccctccatccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattcc 200  Q
    || ||||||| |||||||| |||||||||||||||||||||||| |||| ||||| ||  ||||||| |||||| |||||||||||||||||||||||||    
T  15035985 taaaaaacaatctttcaggatcaatccctccatccatgggtaacttggtcaatttagaatctattctccttcatgaaaataaactctctggaccaattcc 15036084  T
Q  201 ttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttg 300  Q
    ||||||||||||||||||||||||||| |||| |||| |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15036085 ttccactattggaaatttaaccaaagtgagtgaattattaatttactcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttg 15036184  T
Q  301 gatattatagacctttcactaaataatctctctg 334  Q
    |||  |||  ||||||||||||||||||||||||    
T  15036185 gattctattcacctttcactaaataatctctctg 15036218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 176 - 334
Target Start/End: Original strand, 15031066 - 15031224
Alignment:
Q  176 aaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccacc 275  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || ||| | |||  ||||  |||||  | |||||||||||||||| ||||||||||    
T  15031066 aaaataatctctctggaccaattccttccactattggaaatttgacaaaactcagtacattatctctttatttaaatgctctcactggacaaattccacc 15031165  T
Q  276 ttccataggtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    |||||||||||| ||||| |||||||||| ||| |||||||||| ||||||||||||||    
T  15031166 ttccataggtaacttgatcaatttggatantattgacctttcacaaaataatctctctg 15031224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 133 - 334
Target Start/End: Complemental strand, 14533860 - 14533659
Alignment:
Q  133 tccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtg 232  Q
    ||||| ||||||||||| |||||||||||||||   |||    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||     
T  14533860 tccataggtaacctggttaatttggatactattgacctttcagaaaataaactctctagaccaattccttccactgttggaaatttaacgaaagtaagta 14533761  T
Q  233 tattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggatattatagacctttcactaaataatctctc 332  Q
    |||||  ||||   |||||||||||||||||| || |||||||||||||||||||  || |||||||||||| |||  ||||||||  |||||| |||||    
T  14533760 tattatctcttcattcaaatgctctcactggacaacttccaccttccataggtaacatggttaatttggatactatttacctttcagaaaataaactctc 14533661  T
Q  333 tg 334  Q
    ||    
T  14533660 tg 14533659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 334
Target Start/End: Original strand, 15009694 - 15009910
Alignment:
Q  118 gggtcaatccctccatccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatt 217  Q
    ||||||||||| |||||||| |||||  || | ||||| |||||||||   |||    ||||||  ||||||||||||||||||| |||||| |||||||    
T  15009694 gggtcaatcccaccatccataggtaatttgattaatttagatactattgacctttcacaaaatactctctctggaccaattcctttcactatcggaaatt 15009793  T
Q  218 taaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggatattatagacctttc 317  Q
    |||| ||  |||||| |||   | |||  |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  15009794 taacgaagctaagtgaattgtatttttattcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattattgacctttc 15009893  T
Q  318 actaaataatctctctg 334  Q
    |  |||| |||||||||    
T  15009894 aagaaatcatctctctg 15009910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 334
Target Start/End: Original strand, 15030792 - 15031008
Alignment:
Q  118 gggtcaatccctccatccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatt 217  Q
    ||||||||||| |||||||| |||||  || | ||||| |||||||||   |||    ||||||  ||||||||||||||||||| |||||| |||||||    
T  15030792 gggtcaatcccaccatccataggtaatttgattaatttagatactattgacctttcacaaaatactctctctggaccaattcctttcactatcggaaatt 15030891  T
Q  218 taaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggatattatagacctttc 317  Q
    |||| ||  |||||| |||   | |||  |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  15030892 taacgaagctaagtgaattgtatttttattcaaatgctctcactggacaaattccaccttccataggtaacttgatcaatttggatattattgacctttc 15030991  T
Q  318 actaaataatctctctg 334  Q
    |  |||| |||||||||    
T  15030992 aagaaatcatctctctg 15031008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 14503010 - 14503243
Alignment:
Q  20 tttacctttatcaaaaccatctcattggtagcattcccaatgaatttggaaaactttattccctttcgacaatccaattgttagaaaacaacctttcagg 119  Q
    |||||||||||  |||||||||||||||||||||||| |||||| |||| |||||| |||| |||   |||||||||||| | || || ||||| || ||    
T  14503010 tttacctttatgcaaaccatctcattggtagcattcctaatgaagttgggaaacttcattctcttaaaacaatccaattgcttgacaataacctctctgg 14503109  T
Q  120 gtcaatccctccatccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaattta 219  Q
    | ||||||| |||||||| |||||  |||| |||||| || ||||| | |||  | ||||||| |||||||||||||||||||| ||||| ||||||||     
T  14503110 gccaatcccaccatccataggtaatttggttaatttgaattctattatcctttttcaaaataacctctctggaccaattccttcaactatcggaaatttg 14503209  T
Q  220 accaaagtaagtgtattacttcttttctcaaatg 253  Q
    || ||| | | | |||||  ||||||||||||||    
T  14503210 acgaaactcactatattaaatcttttctcaaatg 14503243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 118 - 334
Target Start/End: Original strand, 15023811 - 15024027
Alignment:
Q  118 gggtcaatccctccatccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatt 217  Q
    ||||||||||| |||||||| |||||  || | |||||||||| ||||   |||    ||||||| ||||||||||||||||||| |||||| |||||||    
T  15023811 gggtcaatcccaccatccataggtaatttgattaatttggatagtattgacctttcacaaaataatctctctggaccaattcctttcactatcggaaatt 15023910  T
Q  218 taaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggatattatagacctttc 317  Q
    |||||||| |||||| |||   | |||  |||||||||||| | ||| |||||||||||||||||||||| ||||| ||||||||| ||||  |||| ||    
T  15023911 taaccaaactaagtgaattgtatttttattcaaatgctctctccggagaaattccaccttccataggtaacttgatcaatttggatcttattcacctatc 15024010  T
Q  318 actaaataatctctctg 334  Q
    |  |||| |||||||||    
T  15024011 aagaaatcatctctctg 15024027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 334
Target Start/End: Original strand, 15009968 - 15010126
Alignment:
Q  176 aaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccacc 275  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || ||| | |||  ||||  |||||  | |||||||||||||||| ||||||||||    
T  15009968 aaaataatctctctggaccaattccttccactattggaaatttgacaaaactcagtacattatctctttatttaaatgctctcactggacaaattccacc 15010067  T
Q  276 ttccataggtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    |||| ||||||| ||||| |||||||||| |||   |||||||  |||| |||||||||    
T  15010068 ttccgtaggtaacttgatcaatttggataatatttccctttcaagaaatcatctctctg 15010126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 15024021 - 15024171
Alignment:
Q  184 ctctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccatag 283  Q
    ||||||||||||||||||||||| || ||||||||||| ||| |  ||  ||||  ||||||||||||||||||  ||||| ||||||||||||||||||    
T  15024021 ctctctggaccaattccttccaccatcggaaatttaacaaaactcggtacattatctcttttctcaaatgctcttgctggacaaattccaccttccatag 15024120  T
Q  284 gtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    | |||||||| |||||||||| |||  ||||||||  |||| |||||||||    
T  15024121 gaaatttgataaatttggatactatttacctttcaaaaaatcatctctctg 15024171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 334
Target Start/End: Original strand, 15031210 - 15031368
Alignment:
Q  176 aaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccacc 275  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||| |||   | |||  |||||||||||| | ||| ||||||||||    
T  15031210 aaaataatctctctggaccaattcctttcactatcggaaatttaaccaaactaagtgaattgtatttttattcaaatgctctctccggagaaattccacc 15031309  T
Q  276 ttccataggtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    |||||||||||| ||||| ||||||||| ||||  |||| |||  |||| |||||||||    
T  15031310 ttccataggtaacttgatcaatttggatcttattcacctatcaagaaatcatctctctg 15031368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 15031362 - 15031512
Alignment:
Q  184 ctctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccatag 283  Q
    ||||||||||||||||||||||| || ||||||||||| ||| |  ||  ||||  ||||||||||||||||||  ||||| ||||||||||||||||||    
T  15031362 ctctctggaccaattccttccaccatcggaaatttaacaaaactcggtacattatctcttttctcaaatgctcttgctggacaaattccaccttccatag 15031461  T
Q  284 gtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    | |||||||| |||||||||| |||  ||||||||  |||| |||||||||    
T  15031462 gaaatttgataaatttggatactatttacctttcaaaaaatcatctctctg 15031512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 304
Target Start/End: Original strand, 15001157 - 15001277
Alignment:
Q  184 ctctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccatag 283  Q
    ||||||||||||||||||| |||||| ||||||||||| ||| |||||| |||   | |||  |||||||||||||||||| ||||||||||||||||||    
T  15001157 ctctctggaccaattcctttcactatcggaaatttaacgaaactaagtgaattgtatttttattcaaatgctctcactggacaaattccaccttccatag 15001256  T
Q  284 gtaatttgattaatttggata 304  Q
    |||| ||||| ||||||||||    
T  15001257 gtaacttgatcaatttggata 15001277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 333
Target Start/End: Complemental strand, 14533959 - 14533804
Alignment:
Q  178 aataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccacctt 277  Q
    |||||| ||||||||||| ||||||| ||||| |||||||| || ||| | |  || |||  ||||| ||||||||||||||| ||| ||||||||||||    
T  14533959 aataaaatctctggaccacttccttctactatcggaaatttgacaaaactcacagtgttatatctttcctcaaatgctctcaccggacaaattccacctt 14533860  T
Q  278 ccataggtaatttgattaatttggatattatagacctttcactaaataatctctct 333  Q
    ||||||||||  || |||||||||||| ||| |||||||||  |||||| ||||||    
T  14533859 ccataggtaacctggttaatttggatactattgacctttcagaaaataaactctct 14533804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 273
Target Start/End: Complemental strand, 14523589 - 14523455
Alignment:
Q  139 ggtaacctggtaaatttggatactatt--cttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtatt 236  Q
    |||||||| || |||||||||||||||  ||| ||||  |||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||    
T  14523589 ggtaaccttgtcaatttggatactattgactt-ttca-caaaataaactctctggaccacttccttccactatcggaaatttaacgaaagtaagtgaatt 14523492  T
Q  237 acttcttttctcaaatgctctcactggaaaaattcca 273  Q
    |  | || |||||||||||||| ||||||| ||||||    
T  14523491 atcttttctctcaaatgctctctctggaaatattcca 14523455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 334
Target Start/End: Original strand, 15024130 - 15024315
Alignment:
Q  149 taaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctc 248  Q
    |||||||||||||||||   |||   |||||| | |||||||||||||||| |||||  || ||||||||||| ||| | |||  ||||  ||||  |      
T  15024130 taaatttggatactatttacctttcaaaaaatcatctctctggaccaattctttccatcatcggaaatttaacaaaattgagtaaattaactcttggcgt 15024229  T
Q  249 aaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||   ||   |||||||| ||||||||||||||    
T  15024230 aaatgctctcaccggacaaattccaccttccataggtaatttgattaatttggattacatttccctttcacaaaataatctctctg 15024315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 334
Target Start/End: Original strand, 15031471 - 15031656
Alignment:
Q  149 taaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctc 248  Q
    |||||||||||||||||   |||   |||||| | |||||||||||||||| |||||  || ||||||||||| ||| | |||  ||||  ||||  |      
T  15031471 taaatttggatactatttacctttcaaaaaatcatctctctggaccaattctttccatcatcggaaatttaacaaaattgagtaaattaactcttggcgt 15031570  T
Q  249 aaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||   ||   |||||||| ||||||||||||||    
T  15031571 aaatgctctcaccggacaaattccaccttccataggtaatttgattaatttggattacatttccctttcacaaaataatctctctg 15031656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 14481461 - 14481640
Alignment:
Q  36 ccatctcattggtagcattcccaatgaatttggaaaactttattccctttcgacaatccaattgttagaaaacaacctttcagggtcaatccctccatcc 135  Q
    |||||| | ||||| |||||| | |||| | ||||| ||||||||||||    || ||||  |||||  ||||||||| || ||| |||||||| |||||    
T  14481461 ccatctaactggtaacattcctactgaagtcggaaacctttattcccttcaatcattccagctgttaagaaacaacctctccgggccaatcccttcatcc 14481560  T
Q  136 atgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaa 215  Q
    || |||||| |||| |||||||||| |||||| ||||| | ||| || |||||||||||||||||||||||||| |||||    
T  14481561 attggtaacttggtcaatttggataatattctccttcaaataaacaatctctctggaccaattccttccactatcggaaa 14481640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 14534208 - 14534043
Alignment:
Q  1 ttgagcaatttacattatctttacctttatcaaaaccatctcattggtagcattcccaatgaatttggaaaactttattccctttcgacaatccaattgt 100  Q
    ||||||||||||||||  || ||||||||||| ||||||||||| || |||||||| | |||| ||||||| || ||||||||||  ||||| |||||||    
T  14534208 ttgagcaatttacattggctatacctttatcagaaccatctcatggggagcattccaagtgaagttggaaatctctattcccttttcacaattcaattgt 14534109  T
Q  101 tagaaaacaacctttcagggtcaatccctccatccatgggtaacctggtaaatttggatactattc 166  Q
    ||| |||| |||| || ||  |||||||  | ||||| |||||  ||||||||||| || ||||||    
T  14534108 taggaaaccacctctctggaccaatcccatcttccataggtaatttggtaaatttgaattctattc 14534043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 14533716 - 14533577
Alignment:
Q  133 tccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtg 232  Q
    ||||| |||||| |||| |||||||||||||||   |||    |||||||||||||||||||||||||||||||||| |||||||| || ||| | | |     
T  14533716 tccataggtaacatggttaatttggatactatttacctttcagaaaataaactctctggaccaattccttccactatcggaaatttgacaaaacttaatt 14533617  T
Q  233 tattacttcttttctcaaatgctctcactggaaaaattcc 272  Q
     ||||   |||||||||||| | ||||||||||| |||||    
T  14533616 cattatcacttttctcaaattccctcactggaaatattcc 14533577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 334
Target Start/End: Original strand, 15016155 - 15016313
Alignment:
Q  176 aaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccacc 275  Q
    |||||||  ||||||||||| |||||| |||||| |||||||| || ||| | | | || ||  ||||| |||||||| |||||| ||| ||||||||||    
T  15016155 aaaataatatctctggaccacttcctttcactataggaaatttgacaaaactcaatatactatatctttactcaaatgatctcaccggacaaattccacc 15016254  T
Q  276 ttccataggtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    || ||||| |||||| ||||||||| ||| | |  ||||||||   |||||||||||||    
T  15016255 tttcatagataatttaattaatttgcatactctttacctttcatacaataatctctctg 15016313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 15001100 - 15001163
Alignment:
Q  271 ccaccttccataggtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    ||||| ||||||||||||||||||||||| |||| ||| |||||||||| ||||| ||||||||    
T  15001100 ccaccatccataggtaatttgattaatttagatactattgacctttcacaaaatactctctctg 15001163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 15010184 - 15010226
Alignment:
Q  176 aaaataaactctctggaccaattccttccactattggaaattt 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  15010184 aaaataatctctctggaccaattccttccactattggaaattt 15010226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 15036205 - 15036290
Alignment:
Q  177 aaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactg 262  Q
    |||||| |||||||||||||||||||||||||| | |||||| || ||| | |||| ||||  |||||| |||||| |||||||||    
T  15036205 aaataatctctctggaccaattccttccactatcgaaaatttgacaaaactcagtgcattaactcttttatcaaattctctcactg 15036290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 15009915 - 15009951
Alignment:
Q  267 aattccaccttccataggtaatttgattaatttggat 303  Q
    |||||||||||||||||||||||||||||||||||||    
T  15009915 aattccaccttccataggtaatttgattaatttggat 15009951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 15031013 - 15031049
Alignment:
Q  267 aattccaccttccataggtaatttgattaatttggat 303  Q
    |||||||||||||||||||||||||||||||||||||    
T  15031013 aattccaccttccataggtaatttgattaatttggat 15031049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 15016112 - 15016169
Alignment:
Q  277 tccataggtaatttgattaatttggatattatagacctttcactaaataatctctctg 334  Q
    |||||||||||||||||||||||||||| |||  ||||||||  ||||||| ||||||    
T  15016112 tccataggtaatttgattaatttggatactattaacctttcagaaaataatatctctg 15016169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 15010131 - 15010167
Alignment:
Q  267 aattccaccttccataggtaatttgattaatttggat 303  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15010131 aattccaccttccataggtaatttgactaatttggat 15010167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 15024301 - 15024343
Alignment:
Q  176 aaaataaactctctggaccaattccttccactattggaaattt 218  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||    
T  15024301 aaaataatctctctggaccaattccatccactatcggaaattt 15024343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 15031642 - 15031684
Alignment:
Q  176 aaaataaactctctggaccaattccttccactattggaaattt 218  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||    
T  15031642 aaaataatctctctggaccaattccatccactatcggaaattt 15031684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 15039875 - 15039929
Alignment:
Q  262 ggaaaaattccaccttccataggtaatttgattaatttggatattatagaccttt 316  Q
    ||||||||||||||||| || |||||  |||| |||||||||||||| |||||||    
T  15039875 ggaaaaattccaccttcaattggtaacctgatcaatttggatattattgaccttt 15039929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 15039972 - 15040037
Alignment:
Q  208 attggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattcca 273  Q
    |||||||||||||| |||||||||| ||||  |||||| ||||| | ||||||||| || ||||||    
T  15039972 attggaaatttaacgaaagtaagtgcattatctcttttatcaaacgatctcactgggaatattcca 15040037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 15001299 - 15001331
Alignment:
Q  184 ctctctggaccaattccttccactattggaaat 216  Q
    |||||||||||||||||||||||| ||||||||    
T  15001299 ctctctggaccaattccttccactgttggaaat 15001331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 11356 - 11659
Alignment:
Q  1 ttgagcaatttacattatctttacctttatcaaaaccatctcattggtagcattcccaatgaatttggaaaactttattccctttcgacaatccaattgt 100  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||    
T  11356 ttgagcaatttatattatctttacctttattcaaaccatctcattggtagcattccgaatgaagttggaaaactttattccctttccacaatccagttgt 11455  T
Q  101 tagaaaacaacctttcagggtcaatccctccatccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattcc 200  Q
    |||| |||||||| |||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| ||||||| |||||||||||| |||||||||||    
T  11456 tagacaacaacctctcagggtcaatccctccatccatgagtaacttggtcaatttggattctattctccttcatagaaataaactctcgggaccaattcc 11555  T
Q  201 ttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttg 300  Q
    | ||||||| |||||||| || ||| | |   | |||  ||||||||||||||||||||| ||| |||||||||||||||||  ||| ||| | ||||||    
T  11556 taccactatcggaaatttgacaaaactcacaatgttatctcttttctcaaatgctctcaccggacaaattccaccttccatatataacttggtcaatttg 11655  T
Q  301 gata 304  Q
    ||||    
T  11656 gata 11659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 303
Target Start/End: Original strand, 11640 - 11802
Alignment:
Q  141 taacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattactt 240  Q
    |||| |||| ||||||||||||||| | ||||||| ||||| ||| |||||||| ||||||| |||||| |||||||| || ||| | | ||  |||  |    
T  11640 taacttggtcaatttggatactattgtccttcatacaaatacactatctggacctattcctttcactataggaaatttgacaaaactcactgagttaact 11739  T
Q  241 cttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggat 303  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||||| ||| | |||||||||    
T  11740 cttttctcaaatgctctcaccggacaaattccacattccataggtaacttggtcaatttggat 11802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 287
Target Start/End: Original strand, 11776 - 11930
Alignment:
Q  133 tccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtg 232  Q
    ||||| |||||| |||| ||||||||| ||||| | ||||||| |||||||||||| ||||||||||||| ||||||   |||||| || ||| | |  |    
T  11776 tccataggtaacttggtcaatttggattctattatccttcatataaataaactctcgggaccaattccttgcactataaaaaatttgacaaaactcacag 11875  T
Q  233 tattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaa 287  Q
    | |||  ||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  11876 tgttatctcttttctcaaatgctctcaccggacaaattccaccttccattggtaa 11930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 273
Target Start/End: Original strand, 5544 - 5772
Alignment:
Q  45 tggtagcattcccaatgaatttggaaaactttattccctttcgacaatccaattgttagaaaacaacctttcagggtcaatccctccatccatgggtaac 144  Q
    ||||| |||||||| |||| ||||||| ||  |||||||| | ||||||||||||| || ||||||||| || ||| |||||||  ||||||| |||||     
T  5544 tggtaacattcccagtgaagttggaaagctcaattcccttaccacaatccaattgtcaggaaacaacctctctgggccaatcccatcatccattggtaat 5643  T
Q  145 ctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttt 244  Q
     || | || |||  | ||||||||||| || | ||||||||||  ||||  ||||||||||||||||||||||| || ||| | | |   |||  ||||     
T  5644 ttgatcaaattgacttctattcttcttgatgataataaactctgcggacatattccttccactattggaaatttgacaaaactcactaagttatctctta 5743  T
Q  245 tctcaaatgctctcactggaaaaattcca 273  Q
    | |||||||||||||||||||| ||||||    
T  5744 tttcaaatgctctcactggaaatattcca 5772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 11964 - 12005
Alignment:
Q  177 aaataaactctctggaccaattccttccactattggaaattt 218  Q
    |||||||| |||||||||||||||| ||||||| ||||||||    
T  11964 aaataaaccctctggaccaattcctcccactatcggaaattt 12005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 11999 - 12302
Alignment:
Q  1 ttgagcaatttacattatctttacctttatcaaaaccatctcattggtagcattcccaatgaatttggaaaactttattccctttcgacaatccaattgt 100  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||    
T  11999 ttgagcaatttatattatctttacctttattcaaaccatctcattggtagcattccgaatgaagttggaaaactttattccctttccacaatccagttgt 12098  T
Q  101 tagaaaacaacctttcagggtcaatccctccatccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattcc 200  Q
    |||| |||||||| |||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| ||||||| |||||||||||| |||||||||||    
T  12099 tagacaacaacctctcagggtcaatccctccatccatgagtaacttggtcaatttggattctattctccttcatagaaataaactctcgggaccaattcc 12198  T
Q  201 ttccactattggaaatttaaccaaagtaagtgtattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttg 300  Q
    | ||||||| |||||||| || ||| | |   | |||  ||||||||||||||||||||| ||| |||||||||||||||||  ||| ||| | ||||||    
T  12199 taccactatcggaaatttgacaaaactcacaatgttatctcttttctcaaatgctctcaccggacaaattccaccttccatatataacttggtcaatttg 12298  T
Q  301 gata 304  Q
    ||||    
T  12299 gata 12302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 303
Target Start/End: Original strand, 12283 - 12445
Alignment:
Q  141 taacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattactt 240  Q
    |||| |||| ||||||||||||||| | ||||||| ||||| ||| |||||||| ||||||| |||||| |||||||| || ||| | | ||  |||  |    
T  12283 taacttggtcaatttggatactattgtccttcatacaaatacactatctggacctattcctttcactataggaaatttgacaaaactcactgagttaact 12382  T
Q  241 cttttctcaaatgctctcactggaaaaattccaccttccataggtaatttgattaatttggat 303  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||||| ||| | |||||||||    
T  12383 cttttctcaaatgctctcaccggacaaattccacattccataggtaacttggtcaatttggat 12445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 287
Target Start/End: Original strand, 12419 - 12573
Alignment:
Q  133 tccatgggtaacctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtg 232  Q
    ||||| |||||| |||| ||||||||| ||||| | ||||||| |||||||||||| ||||||||||||| ||||||   |||||| || ||| | |  |    
T  12419 tccataggtaacttggtcaatttggattctattatccttcatataaataaactctcgggaccaattccttgcactataaaaaatttgacaaaactcacag 12518  T
Q  233 tattacttcttttctcaaatgctctcactggaaaaattccaccttccataggtaa 287  Q
    | |||  ||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  12519 tgttatctcttttctcaaatgctctcaccggacaaattccaccttccattggtaa 12573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 273
Target Start/End: Original strand, 6188 - 6416
Alignment:
Q  45 tggtagcattcccaatgaatttggaaaactttattccctttcgacaatccaattgttagaaaacaacctttcagggtcaatccctccatccatgggtaac 144  Q
    ||||| |||||||| |||| ||||||| ||  |||||||| | ||||||||||||| || ||||||||| || ||| |||||||  ||||||| |||||     
T  6188 tggtaacattcccagtgaagttggaaagctcaattcccttaccacaatccaattgtcaggaaacaacctctctgggccaatcccatcatccattggtaat 6287  T
Q  145 ctggtaaatttggatactattcttcttcataaaaataaactctctggaccaattccttccactattggaaatttaaccaaagtaagtgtattacttcttt 244  Q
     || | || |||  | ||||||||||| || | ||||||||||  ||||  ||||||||||||||||||||||| || ||| | | |   |||  ||||     
T  6288 ttgatcaaattgacttctattcttcttgatgataataaactctgcggacatattccttccactattggaaatttgacaaaactcactaagttatctctta 6387  T
Q  245 tctcaaatgctctcactggaaaaattcca 273  Q
    | |||||||||||||||||||| ||||||    
T  6388 tttcaaatgctctcactggaaatattcca 6416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 12607 - 12648
Alignment:
Q  177 aaataaactctctggaccaattccttccactattggaaattt 218  Q
    |||||||| |||||||||||||||| ||||||| ||||||||    
T  12607 aaataaaccctctggaccaattcctcccactatcggaaattt 12648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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