View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10455_low_1 (Length: 561)
Name: NF10455_low_1
Description: NF10455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10455_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Complemental strand, 14966074 - 14965624
Alignment:
| Q |
13 |
gagatgaaggcaacaactgccaaaaatgtactactcaaagatcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaac |
112 |
Q |
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|||| ||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14966074 |
gagaagaatgcagcaactgccgaaagtgtactactcaaaagtcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaac |
14965975 |
T |
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| Q |
113 |
taatggtacttatactttttgttctaattttaacctagaagagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctaccag |
212 |
Q |
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| T |
14965974 |
taatggtactta--ctttttattctaattttaacctagaaaagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctactag |
14965877 |
T |
|
| Q |
213 |
taaaaacaaaagcatcaggaagagatagaagagcactcaacccttgcttctctctcatgacttatgccaagatccctcaatcgcacctccagtcatacta |
312 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
14965876 |
taaaaataaaagcatcaggaagagatagaagagcactcaacccttgcttctctctcatgacttctgccaagatccctcaatcgcacctccgatcatacta |
14965777 |
T |
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| Q |
313 |
gacaaacaatttactacatcatattattttctaatatgccatatattgtatctatgaacttacaaaacaaagctttatccattaagttgacatctcttag |
412 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
14965776 |
gacaaacaatttactacatcatattatgttctaatatgccatatattgtatctatgaaattacaaaacaaagctctaaacattaagttgacatctcttag |
14965677 |
T |
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| Q |
413 |
attcaaataaagacaattaaaggtaactaccgtttttactaaatttcaacatt |
465 |
Q |
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| T |
14965676 |
acacaaataaagacaattaaaggtaactaccatttttactaaaatgcaacatt |
14965624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 561
Target Start/End: Complemental strand, 14965605 - 14965528
Alignment:
| Q |
484 |
acgatactaacttagtatctaaaattattgtttttgatactttacacatatgtgttttcaaattatcttaaaaacaca |
561 |
Q |
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|||||||||||||| ||||||||||| | | || || |||||||||| ||||| |||||||||| | |||||||||| |
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| T |
14965605 |
acgatactaacttactatctaaaattgtcgagttggagactttacacaaatgtggtttcaaattaccctaaaaacaca |
14965528 |
T |
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