View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_high_11 (Length: 414)
Name: NF10456_high_11
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_high_11 |
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| [»] scaffold0427 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 17620671 - 17620286
Alignment:
| Q |
1 |
caaaccatctttgaattccttgatgattgtgtctctctcttcagtttgaagagcaccttgtatagaagtaacctcatagccaaaatcaacaagagatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17620671 |
caaaccatctttgaattccttgatgattgtgtctctctcttcagtttgaagagcaccttgtatggaagtaacctcatagccaaaatcaacaagagatttg |
17620572 |
T |
|
| Q |
101 |
tgcaacatttttgcactatttctagtgcgcacaaatataatagtttgccctacattctctcctaattcaaagatataatctttaatcacttcaatcttag |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
17620571 |
tgcaacatttttgcactgtttctagtgcgcacaaatataatagtttgccccacattctctcctaattcgaatatataatctttaatcacttcaatcttag |
17620472 |
T |
|
| Q |
201 |
cgagttcatcgggacaatgcactttgtactgcttcactgcttctaaagatagctcctctttcttcacaaaatatttgttatactccttcttcgcaacaat |
300 |
Q |
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|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
17620471 |
cgagttcatcggtacatttcactttgtactgcttcactgcttctaaagatagctcctctttcttcacaaaatattcattatgctccttcttcgcaacaat |
17620372 |
T |
|
| Q |
301 |
ccttgtagcgaaattcttgacagtgtcattaaatgtagcagaaaacagaagaacctgaagaaacacaagccaatccttggtcacca |
386 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17620371 |
ccttgtagcgaagttcttgacagtgtcatcaaatgtagcagaaaacaaaagaacctgaagaaacacaagccaatccttggtcacca |
17620286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 27074136 - 27073762
Alignment:
| Q |
1 |
caaaccatctttgaattccttgatgattgtgtctctctcttcagtttgaagagcaccttgtatagaagtaacctcatagccaaaatcaacaagagatttg |
100 |
Q |
| |
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||||||||||||||| || |||| |||| ||||||| || || | ||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| |
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| T |
27074136 |
caaaccatctttgaactctttgacgattttgtctctatcaacatggtcaagagcaccttgtatggaagtgacctcatagcctaaatcaacaagagctttg |
27074037 |
T |
|
| Q |
101 |
tgcaacatttttgcactatttctagtgcgcacaaatataatagtttgccctacattctctcctaattcaaagatataatctttaatcacttcaatcttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||| ||||| ||| |
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| T |
27074036 |
tgcaacatttttgcactatttctagtgcgcacaaatataatagtttgccccacattctctcctagttcaaatatataatttttaatcacgtcaattttaa |
27073937 |
T |
|
| Q |
201 |
cgagttcatcgggacaatgcactttgtactgcttcactgcttctaaagatagctcctctttcttcacaaaatatttgttatactccttcttcgcaacaat |
300 |
Q |
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| || ||||| ||| | | ||||||||||| || ||||| |||||||||||||||||||||||||||||| || |||| |||||| ||| |||||| |
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| T |
27073936 |
caagctcatcaggaacaagaactttgtactgttttactgcatctaaagatagctcctctttcttcacaaaaagttcattatgctcctttttcccaacaac |
27073837 |
T |
|
| Q |
301 |
ccttgtagcgaaattcttgacagtgtcattaaatgtagcagaaaacagaagaacctgaagaaacacaagccaatc |
375 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
27073836 |
ccttgtagcaaaattcttgacagtttcattaaatgtagcagaaaacagaagaacctgcaaaaacacaagccaatc |
27073762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 1185 - 809
Alignment:
| Q |
5 |
ccatctttgaattccttgatgattgtgtctctctcttcagtttgaagagcaccttgtatagaagtaacctcatagccaaaatcaacaagagatttgtgca |
104 |
Q |
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||||||||||| ||||||| || |||| ||||||||| || ||||||| || |||| ||| | |||| ||||| ||||||||||||| ||| ||| |
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| T |
1185 |
ccatctttgaactccttgaccatcttgtccctctcttcatgttcaagagcatctagtatggaattgaccttatagcttaaatcaacaagagcttta-gca |
1087 |
T |
|
| Q |
105 |
acatttttgcactatttctagtgcgcacaaatataatagtttgccctacattctctcctaattcaaagatataatctttaatcacttcaatcttagcgag |
204 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||| || || |||||||||||||||||||||||||||||||| |
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| T |
1086 |
acatttttgcactatttgtagtgcgcacaaagataatagttttccccacattctctcctgttttgaatatataatctttaatcacttcaatcttagcgag |
987 |
T |
|
| Q |
205 |
ttcatcgggacaatgcactttgtactgcttcactgcttctaaagatagctcctctttcttcacaaaatatttgttatactccttcttcgcaacaatcctt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||| ||| |||||||||||||||| |
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| T |
986 |
ttcatcgggacaatgcactttgtactgcttcactgcttttaaaggtagctcctctttcttcacaaaaatttcattatgctc---cttcgcaacaatcctt |
890 |
T |
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| Q |
305 |
gtagcgaaattcttgacagtgtcattaaatgtagcagaaaacagaagaacctgaagaaacacaagccaatccttggtcacc |
385 |
Q |
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||| |||||||||||||| |||| || |||||||| ||||| | |||||||| | |||||||||||||||||| |||||| |
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| T |
889 |
gtaacgaaattcttgacaatgtcgtttaatgtagccgaaaaaaagagaacctgcaaaaacacaagccaatccttagtcacc |
809 |
T |
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