View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10456_high_2 (Length: 672)

Name: NF10456_high_2
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10456_high_2
NF10456_high_2
[»] chr5 (1 HSPs)
chr5 (1-656)||(3002775-3003431)


Alignment Details
Target: chr5 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 656
Target Start/End: Original strand, 3002775 - 3003431
Alignment:
Q  1 tatggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatgaaaggtgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3002775 tatggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatgaaaggtgtg 3002874  T
Q  101 gtagggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcatagaattcgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3002875 gtagggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcatagaattcgtt 3002974  T
Q  201 tgcaagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgtgttttacttgttttttcaatgtgcaggggccagggag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3002975 tgcaagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgttttttacttgttttttcaatgtgcaggggccagggag 3003074  T
Q  301 tatgacctgttgcaaaatggtgatttgtgaaatgaaatattgggtattttacagcagttaagaacaaatgtaaagcagatgagtttttactgcattacga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3003075 tatgacctgttgcaaaatggtgatttgtgaaatgaaatattgggtattttacagcagttaagaacaaatgtaaagcagatgagtttttactgcattatga 3003174  T
Q  401 tattttatctccgacatagtgtctctttgcggttattatttggagtatttggaaaagtcgtgatatccgcatctaggagaatgtttgttaacaatagcag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3003175 tattttatctccgacatagtgtctctttgcggttattatttggagtattcggaaaagtcgtgatatccgcatctaggagaatgtttgttaacaacagcag 3003274  T
Q  501 catattttttggcgcgctgagcagttatttcaaagctggtgcagg-gcagcggtacatcagtgcaggttcgacagcagtgcagggnnnnnnnccagacac 599  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||| ||    
T  3003275 catattttttggcgcgctgagtagttatttcaaagctggtgcaggtgcagcggtacatcagtgcaggttcgacagcagtgcagggaaaaaaaccagatac 3003374  T
Q  600 gccaagtttggacgctttgtgcttgctagaacggagtgtcactcttccatttgtttc 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003375 gccaagtttggacgctttgtgcttgctagaacggagtgtcactcttccatttgtttc 3003431  T

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