View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_high_23 (Length: 279)
Name: NF10456_high_23
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_high_23 |
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| [»] scaffold2072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 49092589 - 49092423
Alignment:
| Q |
5 |
ttgcaattgaggaattattatattgactttagttcttctagttgagtcacattaaatcttgaacttgattagttatatgtatcaccttccaaattgtggt |
104 |
Q |
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| T |
49092589 |
ttgcaattgaggaattattatattgactctagttcttctagctgagttatattaaatcttggagttgattagttatatgaatcaccttctaaattgtgtt |
49092490 |
T |
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| Q |
105 |
gtcaatatttaggattctaggtagtggcactttcccgtttaattgtttggagtcaaaatattatatatga |
174 |
Q |
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| T |
49092489 |
gtcaa---ttaggatcctaggtagtggcactttccagtttggttgtttggagtcaaaatattatatatga |
49092423 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 1424136 - 1424026
Alignment:
| Q |
155 |
agtcaaaatattatatatgactagtatcatc---attgatattttatattgtatgatcctacgcatgatggacttctcgaagtgtatcttttccaagaca |
251 |
Q |
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| T |
1424136 |
agtcaaaatattatatatgactaatatgatcggcactgatattttatgttgtaagatcctatgcatgatggacttctgcaagtggatcctttccgagaca |
1424037 |
T |
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| Q |
252 |
ctctgggtatc |
262 |
Q |
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| T |
1424036 |
agctgggtatc |
1424026 |
T |
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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 13179757 - 13179833
Alignment:
| Q |
6 |
tgcaattgaggaattattatattgactttagttcttctagttgagtcacattaaatcttgaacttgattagttatat |
82 |
Q |
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| T |
13179757 |
tgcaattgaggaattattatattgactttagttcttctagttgagtcacattaaatcttgaagttgattagatatat |
13179833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 17393757 - 17393634
Alignment:
| Q |
14 |
aggaattattatattgactttagttcttctagttgagtcacattaaatcttgaacttgattagttatatgtatcaccttccaaattgtggtgtcaatatt |
113 |
Q |
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| T |
17393757 |
aggaagtattatattgactctagttcttctggatgagttacattaaatcttgaagtttattagttatatgaatcgccttccgaattgtgttgtcaa---t |
17393661 |
T |
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| Q |
114 |
taggattctaggtagtggcactttccc |
140 |
Q |
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| T |
17393660 |
taggatcctaggtagtggcactttccc |
17393634 |
T |
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Target: scaffold2072 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold2072
Description:
Target: scaffold2072; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 90 - 2
Alignment:
| Q |
5 |
ttgcaattgaggaattattatattgactttagttcttctagttgagtcacattaaatcttgaacttgattagttatatgtatcaccttc |
93 |
Q |
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| T |
90 |
ttgcaattgaggaattattatattgactctagttcttctagctgagttatattaaatcttggagttgattagttatatgaatcaccttc |
2 |
T |
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