View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10456_high_25 (Length: 242)

Name: NF10456_high_25
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10456_high_25
NF10456_high_25
[»] chr7 (1 HSPs)
chr7 (18-242)||(47695453-47695677)
[»] chr1 (5 HSPs)
chr1 (26-242)||(35830211-35830424)
chr1 (18-90)||(13854610-13854682)
chr1 (18-102)||(31009525-31009609)
chr1 (19-53)||(29900199-29900233)
chr1 (18-102)||(31187349-31187433)
[»] chr4 (2 HSPs)
chr4 (183-242)||(52153205-52153264)
chr4 (18-90)||(52153034-52153106)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 47695677 - 47695453
Alignment:
Q  18 catcttgattgtcaacaaattcaatgtagctccaattgatctgttcctttgtatattcttcttgttccattttaaacacgtgctgaaagtcatcatgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47695677 catcttgattgtcaacaaattcaatgtagctccaattgatctgttcctttgtatattcttcttgttccattttaaacacgtgctgaaagtcatcatgaaa 47695578  T
Q  118 aacgtattaaacatggaaataatggtcataacaaaatgaagcttcttatctggtctgagattttgcctgattgaaatgctgttgcaacttctcatttgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47695577 aacgtattaaacatggaaataatggtcataacaaaatgaagcttcttatctggtctgagattttgcctgattgaaatgctgttgcaacttctcatttgta 47695478  T
Q  218 aaattaatgcagaactgctcaaaac 242  Q
    |||||||||||||||||||||||||    
T  47695477 aaattaatgcagaactgctcaaaac 47695453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 35830211 - 35830424
Alignment:
Q  26 ttgtcaacaaattcaatgtagctccaattgatctgttcctttgtatattcttcttgttccattttaaacacgtgctgaaagtcatcatgaaaaacgtatt 125  Q
    ||||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||||  |||||||| || |||| |||| | ||||    
T  35830211 ttgtccacaaattcaatgtagctccaattgatctcctcctttgcatattcttcttgttccattttgaacatatgctgaaattcgtcatcaaaaccatatt 35830310  T
Q  126 aaacatggaaataatggtcataacaaaatgaagcttcttatctggtctgagattttgcctgattgaaatgctgttgcaacttctcatttgtaaaattaat 225  Q
    ||| |||||||| |     | |  ||  |||||    | || | |||||| ||||||||||||||||||| || |||||||| |||||||| ||||||||    
T  35830311 aaatatggaaatta---aaaaaggaacttgaagtgcataatttagtctgaaattttgcctgattgaaatgttgctgcaacttttcatttgtgaaattaat 35830407  T
Q  226 gcagaactgctcaaaac 242  Q
    |||||||||||||||||    
T  35830408 gcagaactgctcaaaac 35830424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 13854610 - 13854682
Alignment:
Q  18 catcttgattgtcaacaaattcaatgtagctccaattgatctgttcctttgtatattcttcttgttccatttt 90  Q
    |||||||||| |||||||| || || || |||||||  |||| ||||||||||||||| ||||| ||||||||    
T  13854610 catcttgattatcaacaaactcgatataactccaatcaatctcttcctttgtatattcctcttgctccatttt 13854682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 31009525 - 31009609
Alignment:
Q  18 catcttgattgtcaacaaattcaatgtagctccaattgatctgttcctttgtatattcttcttgttccattttaaacacgtgctg 102  Q
    ||||||||||||| |||||||| | |||||||||||  |||  ||| ||||| ||||| ||||| ||||| ||||| ||||||||    
T  31009525 catcttgattgtctacaaattctaagtagctccaatcaatcgcttcttttgtgtattcctcttgctccatcttaaaaacgtgctg 31009609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 29900199 - 29900233
Alignment:
Q  19 atcttgattgtcaacaaattcaatgtagctccaat 53  Q
    ||||||||||||||||||||||||||| |||||||    
T  29900199 atcttgattgtcaacaaattcaatgtaactccaat 29900233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 31187349 - 31187433
Alignment:
Q  18 catcttgattgtcaacaaattcaatgtagctccaattgatctgttcctttgtatattcttcttgttccattttaaacacgtgctg 102  Q
    |||||||||| || |||||||| | |||||||||||  |||  ||| ||||| ||||| ||||| ||||| ||||| ||||||||    
T  31187349 catcttgattatctacaaattctaagtagctccaatcaatcccttcttttgtgtattcctcttgctccatgttaaaaacgtgctg 31187433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 52153205 - 52153264
Alignment:
Q  183 cctgattgaaatgctgttgcaacttctcatttgtaaaattaatgcagaactgctcaaaac 242  Q
    ||||||| ||||| || || | ||||||||||||||||||||| ||||||||||||||||    
T  52153205 cctgattaaaatgttgctgtagcttctcatttgtaaaattaatacagaactgctcaaaac 52153264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 52153034 - 52153106
Alignment:
Q  18 catcttgattgtcaacaaattcaatgtagctccaattgatctgttcctttgtatattcttcttgttccatttt 90  Q
    ||||||| ||||||||||| || ||||| ||||||| ||| | ||| || || ||||||||||||||||||||    
T  52153034 catcttggttgtcaacaaactctatgtaactccaatcgatttcttctttggtgtattcttcttgttccatttt 52153106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University