View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_high_26 (Length: 241)
Name: NF10456_high_26
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 4485751 - 4485962
Alignment:
| Q |
8 |
aagcaaaggtggccgtcttattccgtcctatcatggaaggcatacctagatacttaccagtgcccaaaacagctcgaacccccaaaatatgggtgatact |
107 |
Q |
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|||||||||||| |||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4485751 |
aagcaaaggtggtcgtcctattccgtcctatcatgg----catacttagatacttactagtgcccaaaacagctcgaacccccaaaatattggtgatact |
4485846 |
T |
|
| Q |
108 |
atccttcagagcatctgccacatttctactatagaagacttcagactttggcaagctaatttcttgatcggacaccgcatcataaatgttaagaatattt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||| |
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| T |
4485847 |
atccttcagagcatctgccacatttctactatagaagacttcagactttggcaagctaatttcttgaccggacgccgcctcataaatgttatgaatattt |
4485946 |
T |
|
| Q |
208 |
tttatgttgtgtgcct |
223 |
Q |
| |
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|||||||||||||||| |
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| T |
4485947 |
tttatgttgtgtgcct |
4485962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 8864045 - 8864254
Alignment:
| Q |
12 |
aaaggtggccgtcttattccgtcctatcatggaaggcatacctagatacttaccagtgcccaaaacagctcgaacccccaaaatatgggtgatactatcc |
111 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
8864045 |
aaaggtggtcgtcctattccgtcctatcatggaaggcatacctagatacttaccagtgcccaaaacaactcgcacccccaaaatattggtgatactatcc |
8864144 |
T |
|
| Q |
112 |
ttcagagcatctgccacatttctactatagaagacttcagactttggcaagctaatttcttgatcggacaccgcatcataaatgttaagaatatttttta |
211 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||| |
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| T |
8864145 |
ttgagagcatctgtcacatttctactatagaagacttcagactttggcaagctaatttcttgaccggacgtcgcctcataaatgttaagaatattgttta |
8864244 |
T |
|
| Q |
212 |
tgttgtgtgc |
221 |
Q |
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|||||||||| |
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| T |
8864245 |
tgttgtgtgc |
8864254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 17207970 - 17208093
Alignment:
| Q |
8 |
aagcaaaggtggccgtcttattccgtcctatcatggaaggcatacctagatacttaccagtgcccaaaacagctcgaacccccaaaatatgggtgatact |
107 |
Q |
| |
|
||||||| || |||||| || || ||||||||| || |||||||||| ||||||| || ||||||||||| | ||| ||||||||| ||| || || |
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| T |
17207970 |
aagcaaaagtagccgtcctaacccttcctatcatagatggcatacctaagtacttacatgttcccaaaacagcccagaccgccaaaatattggtaatgct |
17208069 |
T |
|
| Q |
108 |
atccttcagagcatctgccacatt |
131 |
Q |
| |
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|| |||||||||||| | |||||| |
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|
| T |
17208070 |
attcttcagagcatcaggcacatt |
17208093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 13813432 - 13813627
Alignment:
| Q |
8 |
aagcaaaggtggccgtcttattccgtcctatcatggaaggcatacctagatacttaccagtgcccaaaacagctcgaacccccaaaatatgggtgatact |
107 |
Q |
| |
|
||||||| ||||||||| ||| |||||| ||||||||||||||||||| ||||||||| || || | || ||| |||| |||||||| | ||| ||| | |
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| T |
13813432 |
aagcaaaagtggccgtcctatcccgtccaatcatggaaggcatacctaaatacttacccgtccctagaatggcttgaactcccaaaatgttggtaatatt |
13813531 |
T |
|
| Q |
108 |
atccttcagagcatctgccacatttctactatagaagacttcagactttggcaagctaatttcttgatcggacaccgcatcataaatgttaagaat |
203 |
Q |
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|| ||||||| ||| | ||||| |||||||| || | ||||||||| || ||| |||| ||||| ||||| |||| |||||| |||||||||| |
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| T |
13813532 |
atttttcagagtatcgggtacattcctactataaaaaatttcagacttcggtaagataatagcttgaccggacgccgcctcataagtgttaagaat |
13813627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 33348305 - 33348252
Alignment:
| Q |
33 |
tcctatcatggaaggcatacctagatacttaccagtgcccaaaacagctcgaac |
86 |
Q |
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||||||||| || |||| ||| |||||||||||||||||||| |||||| |||| |
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| T |
33348305 |
tcctatcatagatggcagaccaagatacttaccagtgcccaatacagcttgaac |
33348252 |
T |
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