View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10456_high_4 (Length: 515)
Name: NF10456_high_4
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 241 - 498
Target Start/End: Original strand, 43439008 - 43439265
Alignment:
| Q |
241 |
ctgcaggaagaaggatgggttgtgtgcagggcatttaaaaagccaagtccaagtcacaggccaggttatgaaccatggtatagtaatcaacaacaaccac |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43439008 |
ctgcaggaagaaggatgggttgtgtgcagggcatttaaaaagccaagtccaagtcacaggccaggttatgaaccatggtatagtaatcaacaacaaccac |
43439107 |
T |
|
| Q |
341 |
agtttttcagagatgatcaaaactatgcaacaacaagacctttatcaattacagatattttgcatgaaaatcgtttactccttcaaaatccttcagctga |
440 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43439108 |
agtatttcagagatgatcaaaactatgcaacaacaagacctttatcaattacagatattttgcatgaaaatcgtttactccttcaaaatcctgcagctga |
43439207 |
T |
|
| Q |
441 |
aggtacaagttttagtcacccctttagcaatgatcaacagtttctattaaaccaaaat |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43439208 |
aggtacaagttttagtcacccctttagcaatgatcaacagtttctatcaaaccaaaat |
43439265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 43438787 - 43438950
Alignment:
| Q |
20 |
ataggaatgaggaagacacttgtcttttacaagggacgtgccccaaatggaaggaaaactgattggatcatgcatgaatatagacatcaaacctctgaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43438787 |
ataggaatgaggaagacacttgtcttttacaagggacgtgccccaaatggaaggaaaactgattggatcatgcatgaatatagacatcaaacctctgaac |
43438886 |
T |
|
| Q |
120 |
atggtcctccacaggcaagttaattaattatttttgcattcaaatcttctttcatacttctact |
183 |
Q |
| |
|
|||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||| |
|
|
| T |
43438887 |
atggtcctccacaggcaagttaattatttttgcattaattcaaatcttctttcatacttctact |
43438950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 8724908 - 8724837
Alignment:
| Q |
245 |
aggaagaaggatgggttgtgtgcagggcatttaaaaagccaagtccaagtcacaggccaggttatgaaccat |
316 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
8724908 |
aggaagaaagataggttgtgtgcaaagcgtttaaaaagcctagtccaagtcacaggccaggttttgaaccat |
8724837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 42048582 - 42048512
Alignment:
| Q |
26 |
atgaggaagacacttgtcttttacaagggacgtgccccaaatggaaggaaaactgattggatcatgcatga |
96 |
Q |
| |
|
||||| ||||| || || |||||||| |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
42048582 |
atgagaaagactctagtgttttacaaaggacgtgccccaaatggacagaaatctgattggatcatgcatga |
42048512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 8726853 - 8726789
Alignment:
| Q |
258 |
ggttgtgtgcagggcatttaaaaagccaagtccaagtcacaggccaggttatgaaccatggtata |
322 |
Q |
| |
|
|||||||| ||| ||||||||||| | ||||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
8726853 |
ggttgtgttcagagcatttaaaaatcgtagtccaaatcagaggccaggttttgaaccatggtata |
8726789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 32225601 - 32225485
Alignment:
| Q |
23 |
ggaatgaggaagacacttgtcttttacaagggacgtgccccaaatggaaggaaaactgattggatcatgcatgaatatagacatcaaacctctgaacatg |
122 |
Q |
| |
|
||||||||||||||||| || || ||||| ||| | || || |||||| |||||||||||||||||||||||||||||| | | |||| |||| ||| |
|
|
| T |
32225601 |
ggaatgaggaagacactcgttttctacaaaggaagagcacctaatggacagaaaactgattggatcatgcatgaatataggcttgaaacagttgaaaatg |
32225502 |
T |
|
| Q |
123 |
gtcctccacaggcaagt |
139 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32225501 |
cacctccacaggcaagt |
32225485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 8450203 - 8450279
Alignment:
| Q |
26 |
atgaggaagacacttgtcttttacaagggacgtgccccaaatggaaggaaaactgattggatcatgcatgaatatag |
102 |
Q |
| |
|
||||||||||| ||||| || ||||| ||| | ||||| |||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
8450203 |
atgaggaagacccttgttttctacaaaggaagagcccctaatggacagaaatctgattggatcatgcatgaatatag |
8450279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University