View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_high_7 (Length: 439)
Name: NF10456_high_7
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 4940583 - 4940358
Alignment:
| Q |
15 |
cataggttatggtagagggaaaagtctataattaggttaatgtttttaggcagataatacaaaattagtggctgtatctatcttcaaagttgataccatt |
114 |
Q |
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| T |
4940583 |
cataggttatggtagagggaaaagtctatgattaggttaatgtttgtaggcagataatacaaaattagtggctgtatctatcttcaaagttgataccatt |
4940484 |
T |
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| Q |
115 |
tgttcctggtaccacttttaatcaaacaaagtccatttatgatttttgaacttttttgtaataaataactaaacccatatcaatacgcaattgaaattaa |
214 |
Q |
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| T |
4940483 |
tgttcctggtaccacttttaatcaaacaaagtccatttatgatttttgaacttttttgtaataaataactaaacccatatcaatacgcaattgaaattaa |
4940384 |
T |
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| Q |
215 |
agcaatgataggaacacattttcttt |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4940383 |
agcaatgataggaacacattttcttt |
4940358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 299 - 422
Target Start/End: Complemental strand, 4940336 - 4940213
Alignment:
| Q |
299 |
caaaaaagtattattgttagtagagtttaattttcatgtaccctcgttatcnnnnnnnnngttttgtactatcaacacacaaccaatagatatgtaattt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4940336 |
caaaaaagtattattgttagtagagtttaattttcatgtaccctcgttatcaaaaaaaaagttttgtactatcaacacacaaccaatagatatgtaattt |
4940237 |
T |
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| Q |
399 |
tagaagtgtgattataatataatt |
422 |
Q |
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|||||||||||||||||||||||| |
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| T |
4940236 |
tagaagtgtgattataatataatt |
4940213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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