View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_1 (Length: 745)
Name: NF10456_low_1
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 15 - 611
Target Start/End: Original strand, 50971706 - 50972301
Alignment:
| Q |
15 |
agagataaagagcatataaaatgatgaacagatttaccgtataacttcaacatacggtattttcttttggactggataaagagcatataatcctgaagag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50971706 |
agagataaagagcatataaaatgatgaacagatttaccatataacttcaacatacggtattttcttttggactggataaagagcatataatcctgaagag |
50971805 |
T |
|
| Q |
115 |
aatttcattcttttggacagtattttctttatcaaccttgctgcttccattttctatagcttcaacatcatctatagactcattgctgccaatgaggttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50971806 |
aatttcattcttttggacagtattttctttatcaaccttgctgcttccattttctatagcttcaacatcatctatagactcattgctgccaatgaggttg |
50971905 |
T |
|
| Q |
215 |
tgaagtgtgtcctgcatgaaatttaagcaattatattgagttagactataaaagtgtcaaaaatagaggccagaacacatatgaaaaaccaaagatatag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50971906 |
tgaagtgtgtcctgcatgaaatttaagcaattatattgagttagactataaaagtgtcaaaaatagaggccagaacac--atgaaaaaccaaagatatag |
50972003 |
T |
|
| Q |
315 |
ggtctgttaaggcatcagtgttaataatattgttaaagcatgaagcaggcaataagtatgatgatagatgttaaagcatgaggcaaattttctacctaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50972004 |
ggtctgttaaggcatcagtgttaataatattgttaaagcatgaagcaggcaataagtatgatgatagatgttaaagcatgaggcaaattttctacctaga |
50972103 |
T |
|
| Q |
415 |
aagagtagaatctgaacaagcaccagtcataggagatcaagtaaacaaattcctcacatgcatctcatcaaacagattacgtgcattctccaaacactac |
514 |
Q |
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| T |
50972104 |
aagagtagaatctgaacaagcaccagtcataggagatcaagtaaacaaattcctcacatgcatttcatcaaacagattacgtgcattctccaaacactac |
50972203 |
T |
|
| Q |
515 |
agcaattgcaaggtt-atgaatcaattcttctcactctcactacaacaaatatcatatcataaatctgaaatttaatttagtaaataagggcaaagag |
611 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
50972204 |
agcaattgcaaggttgatgaatcaattcttctcactctcactacaacaaatatcatatcataaatctgaaatttaatttagtaaatcagagcaaagag |
50972301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 682 - 726
Target Start/End: Original strand, 50972359 - 50972403
Alignment:
| Q |
682 |
ccttcatcagatccattgtcgatctacaaattgagaggtacgtag |
726 |
Q |
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| T |
50972359 |
ccttcatcagatccattgtcgatctacaaattgagaggtacgtag |
50972403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 105 - 277
Target Start/End: Complemental strand, 9008945 - 9008773
Alignment:
| Q |
105 |
tcctgaagagaatttcattcttttggacagtattttctttatcaaccttgctgcttccattttctatagcttcaacatcatctatagactcattgctgcc |
204 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
9008945 |
tcctgaagagaatttcattcttttggactgtattttctttatcaaccttgttgcttccattttctatagcttcaacatcatctatatacccattgatgcc |
9008846 |
T |
|
| Q |
205 |
aatgaggttgtgaagtgtgtcctgcatgaaatttaagcaattatattgagttagactataaaagtgtcaaaaa |
277 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
9008845 |
aatgtggttgtgaagtgtgtcctgcatgaaatctaagcaattatattgagttagactataaaagtgttaaaaa |
9008773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 16519490 - 16519630
Alignment:
| Q |
117 |
tttcattcttttggacagtattttctttatcaaccttgctgcttccattttctatagcttcaacatcatctatagactcattgctgccaatgaggttgtg |
216 |
Q |
| |
|
||||||||||||| || | |||||||| |||||||| ||||||||||||||||||||||| |||||||||| |||||| |||| ||| || | ||||| |
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| T |
16519490 |
tttcattcttttgaactatcttttctttgtcaacctttttgcttccattttctatagcttcagcatcatctatggactcactgctaccattgtgcttgtg |
16519589 |
T |
|
| Q |
217 |
aagtgtgtcctgcatgaaatttaagcaattatattgagtta |
257 |
Q |
| |
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|||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
16519590 |
aagtgtttcctgcatgaagtttaaacaattatattgagtta |
16519630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 500145 - 500221
Alignment:
| Q |
236 |
tttaagcaattatattgagttagactataaaagtgtcaaaaatagaggccagaacacatatgaaaaaccaaagatat |
312 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||| |||||||| |||| || ||||||||||||| |||||||| |
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| T |
500145 |
tttaaacaattatattgagttagaatataaaagtgtagaaaatagaagccataaaacatatgaaaaacgaaagatat |
500221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 36870879 - 36870961
Alignment:
| Q |
151 |
cttgctgcttccattttctatagcttcaacatcatctatagactcattgctgccaatgaggttgtgaagtgtgtcctgcatga |
233 |
Q |
| |
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|||| |||||||||| | | | |||||||| |||||||||||||||||||| |||||| ||||||||||||| || ||||||| |
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| T |
36870879 |
cttgttgcttccattgtttgtggcttcaacgtcatctatagactcattgctaccaatgtggttgtgaagtgtttcttgcatga |
36870961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 4133408 - 4133355
Alignment:
| Q |
458 |
aacaaattcctcacatgcatctcatcaaacagattacgtgcattctccaaacac |
511 |
Q |
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||||||||||| |||||||| |||||||||| |||| ||||||||| |||||| |
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| T |
4133408 |
aacaaattcctgacatgcatttcatcaaacacgttacatgcattctcgaaacac |
4133355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 8423761 - 8423708
Alignment:
| Q |
458 |
aacaaattcctcacatgcatctcatcaaacagattacgtgcattctccaaacac |
511 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||| |||||| |
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| T |
8423761 |
aacaaattcctcacatgcatttcatcaaacactttacatgcattctcgaaacac |
8423708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 508
Target Start/End: Original strand, 36085803 - 36085884
Alignment:
| Q |
427 |
tgaacaagcaccagtcataggagatcaagtaaacaaattcctcacatgcatctcatcaaacagattacgtgcattctccaaa |
508 |
Q |
| |
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|||||||| |||| |||||| ||| ||||||||||||||| ||||| ||| |||||||||| ||| |||| ||||||||| |
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| T |
36085803 |
tgaacaagaaccaatcatagcagaccaagtaaacaaattcatcacaatcatttcatcaaacactttatgtgccttctccaaa |
36085884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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