View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_11 (Length: 415)
Name: NF10456_low_11
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 1729445 - 1729833
Alignment:
| Q |
17 |
attatgatgagtgtaaaactactttgctgattcaatttgagcaataagagttactatcaacaacaaagtactaactttagctaaaaaatacttgcataaa |
116 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1729445 |
attatgatgagtgtaaaactactttgttggttcaatttgagcaataagagttactatcaacaacaaagtactaactttagctaaaaaatacttgcataaa |
1729544 |
T |
|
| Q |
117 |
gcttaacaactttagctaaaaaatcacaacaaagtaactaacttttaaagctaattttcaatacaagttactatcaacaactatgaattattgaacttta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1729545 |
gcttaacaactttagctaaaaaatcacaacaaagtaactaacttttaaagctaattttcaatccaagttactatcaacaactatgaattattgaacttta |
1729644 |
T |
|
| Q |
217 |
ttaaatccaaacacagtgcactaatttaaatgataaatgaagggctatgctatctgaaaattgtatgtttaagtttgatccaaaccagatttttcgtgca |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
1729645 |
ttaaatccaaacacagcgcactaatttaaatgataaatgaagggctatgctatctgaaaattgaatgtttaagtttgatccaaaccagatttttcttgca |
1729744 |
T |
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| Q |
317 |
taatgacaatccataaggatatggtaactaactttctcaatattgttgtagactctacgacataactaattagtagttaaacccctttg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1729745 |
taatgacaatccataaggatatggtaactaactttctcaatattgttgtagactctacgacataactaattagtagttaaacccctttg |
1729833 |
T |
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