View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_13 (Length: 392)
Name: NF10456_low_13
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 38555359 - 38555711
Alignment:
| Q |
18 |
aatatcctcaattgcatttccttttgcttcaagtgattgatactaaggaaagaactttatctctctgttatggatttcctaacttttcaagcataacatt |
117 |
Q |
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| T |
38555359 |
aatatcctcaattatgtatccttttgcttcaagcgattga-actgaggaaagaactttgtctctcagttatggatttcctaacttttcaagcataacatt |
38555457 |
T |
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| Q |
118 |
atgtacaattannnnnnnnnnnnnnnn-agcatcactaagaaactcataaaagtatagataaaggtagaaaagtaaagagatgaaa-tgcgaattaaatt |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| | |
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| T |
38555458 |
atgtacaattgtttttttggatttttttagcatcactaagaaactcataaaagta--gataaaggtagaaaagtaaagagatgaaaatgtgaattaagct |
38555555 |
T |
|
| Q |
216 |
tgttcgtttgattggatgtgtcgattacaatatataaactcaatatttatagccaaaaactatgactattatccgaacaatgtgtcctacagtgagtaat |
315 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | |
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| T |
38555556 |
tgttcgtttgattggatgtgtcgattacaagatataaactcaatatttatagccaaaaactatggctattatccgaacaa---gtcctacagtgagtagt |
38555652 |
T |
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| Q |
316 |
ccttactcggctatctttgcgggtaatttatgaatattccttgctcttgggattgtgat |
374 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38555653 |
ccttacccggctatctttgcgggtaatttgtgaatattccttgctcttgggattgtgat |
38555711 |
T |
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