View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_14 (Length: 392)
Name: NF10456_low_14
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_14 |
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| [»] scaffold0112 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 7643099 - 7643461
Alignment:
| Q |
19 |
atcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatcatatgccaaaccttcatagtaaaatgacactcgaaacaaata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643099 |
atcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatcatatgccaaaccttcatagtaaaatgacactcgaaacaaata |
7643198 |
T |
|
| Q |
119 |
tgagcaagcttcttatgcagaccaccacaactcacacaatttatgggacattgcacttccttatcttgaataatatataagaggctaagagcaattccaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643199 |
tgagcaagcttcttatgcagaccaccacaactcacacaatttatgggacattgcacttccttatcttgaataatatataagaggctaagagcaattccaa |
7643298 |
T |
|
| Q |
219 |
tggggaagtcctttacttaacaagatcatcaacctattaaggaccttcattaaagaaagataaaaatgaatacctattaattatcgttaactagcataac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| |
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| T |
7643299 |
tggggaagtcctttacttaacaagatcatcaacctattaaggaccttcattaaagaaagataaaaatggatacctattagttatcgttaactagtataac |
7643398 |
T |
|
| Q |
319 |
aaatcccacaattaaaacaggaaataaagtataaaagttggtcatatcctctcttaagttcat |
381 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643399 |
aaatcccacaattaaaacagaaaataaagtataaaagttggtcatatcctctcttaagttcat |
7643461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 20250825 - 20250718
Alignment:
| Q |
19 |
atcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatcatatgccaaaccttcatagtaaaatgacactcgaaacaaata |
118 |
Q |
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||||||||||||||| |||| | ||| |||||||||||||||||||||| |||||| || ||||||||| || ||||||| ||||||| ||||||||| |
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| T |
20250825 |
atcaactgctgaattctttttgagaaacacctcatgaaccacattccaaaggccaatcttacgccaaacctgcacagtaaaaggacactcaaaacaaata |
20250726 |
T |
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| Q |
119 |
tgagcaag |
126 |
Q |
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|| ||||| |
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| T |
20250725 |
tgtgcaag |
20250718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 43218794 - 43218963
Alignment:
| Q |
19 |
atcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatcatatgccaaaccttcatagtaaaatgacactcgaaacaaata |
118 |
Q |
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||||||||||||||| ||||| | ||| |||||||||||||||||||||| |||||| || ||||||||| || ||||||| ||||||| ||||||||| |
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| T |
43218794 |
atcaactgctgaattcttttcgagaaacacctcatgaaccacattccaaaggccaatcttacgccaaacctgcacagtaaaaggacactcaaaacaaata |
43218893 |
T |
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| Q |
119 |
tgagcaagcttcttatgcagaccaccacaactcacacaatttatgggacattgcacttccttatcttgaa |
188 |
Q |
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| T |
43218894 |
tgtgcaaggtcctcatgcaggcaacaacaactcacacaacttgtgggacattgcaatcctttatcttgaa |
43218963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 26131195 - 26131055
Alignment:
| Q |
48 |
cctcatgaaccacattccaaagaccaatcatatgccaaaccttcatagtaaaatgacactcgaaacaaatatgagcaagcttcttatgcagaccaccaca |
147 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||| || | ||||| ||||||| ||||||||||| |||| | || |||||| |||||||| |
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| T |
26131195 |
cctcatgaaccgcattccaaaggccaatcatatgccaaacctgcaaattaaaaggacactcaaaacaaatatgtacaaggtcctcatgcaggccaccaca |
26131096 |
T |
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| Q |
148 |
actcacacaatttatgggacattgcacttccttatcttgaa |
188 |
Q |
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|||||||||| || |||||||||||||| | |||||||||| |
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| T |
26131095 |
actcacacaacttgtgggacattgcactcctttatcttgaa |
26131055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 8789815 - 8789655
Alignment:
| Q |
28 |
tgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatcatatgccaaaccttcatagtaaaatgacactcgaaacaaatatgagcaagc |
127 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| |||||||||| | | || ||||||||| || ||||||| |||| | |||||||||||||||||| |
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| T |
8789815 |
tgaattcttttcaagaaacacctcatgaaccgtattccaaagatcggttgtacgccaaacctgcacagtaaaaggacatttgaaacaaatatgagcaagg |
8789716 |
T |
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| Q |
128 |
ttcttatgcagaccaccacaactcacacaatttatgggacattgcacttccttatcttgaa |
188 |
Q |
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| || ||| ||||| |||| ||||||||| ||||||||||||||||| | |||||||||| |
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| T |
8789715 |
tcctcatgtggaccatcacagctcacacaacttatgggacattgcactcctttatcttgaa |
8789655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 33925 - 33756
Alignment:
| Q |
19 |
atcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatcatatgccaaaccttcatagtaaaatgacactcgaaacaaata |
118 |
Q |
| |
|
|||| ||||| |||| ||||||| ||| | |||||||||| |||||||||||| | || ||||||||| || ||||||| |||| || ||||||||| |
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| T |
33925 |
atcagctgctaaattcttttcaagaaacacatcatgaaccatattccaaagaccggttgtacgccaaacctgcacagtaaaaggacattctaaacaaata |
33826 |
T |
|
| Q |
119 |
tgagcaagcttcttatgcagaccaccacaactcacacaatttatgggacattgcacttccttatcttgaa |
188 |
Q |
| |
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|||||||| | || ||| ||||| || |||||||| || |||||||||||| |||| |||||||||| |
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| T |
33825 |
tgagcaaggtcctcatgtggaccagcataactcacaaaacttatgggacattacactcttttatcttgaa |
33756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 15617569 - 15617433
Alignment:
| Q |
19 |
atcaactgctgaattattttcaaaaaatgcctcatgaaccacattccaaagaccaatcatatgccaaaccttcatagtaaaatgacac-------tcgaa |
111 |
Q |
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||||||| ||||||| ||||| | ||| || || | ||||||||||||||||| | | || ||||||||| |||||| ||| ||||| ||||| |
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| T |
15617569 |
atcaactactgaattcttttcgagaaacgcttcgttaaccacattccaaagacgagccctacgccaaacctgcatagttaaaggacactcgaatttcgaa |
15617470 |
T |
|
| Q |
112 |
acaaatatgagcaagcttcttatgcagaccaccacaa |
148 |
Q |
| |
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||||||||||||||| | || ||| |||||||||||| |
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|
| T |
15617469 |
acaaatatgagcaagatcctcatgaagaccaccacaa |
15617433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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