View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10456_low_16 (Length: 345)
Name: NF10456_low_16
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 50507618 - 50507305
Alignment:
| Q |
1 |
atattattcggaccatatcttataattatgattatgatagcggatattttatttatttatgccaaaatattgctatgggttttatagtgctatgaaaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50507618 |
atattattcggatcatatcttataattatgattatgatagcggatattttatttatttatgccaaaatattgctatgggttttatagtgctatgaaaaat |
50507519 |
T |
|
| Q |
101 |
gcaaatgagcataaatcattttgattttttatgatacatttgtaatggtaattaatattggtaattaattacatttatgagtattagaagtgaatgaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50507518 |
gcaaatgagcataaatcattttgattttttatgatacatttgta-------------ttggtaattaattacatttatgagtattagaagtgaatgaccc |
50507432 |
T |
|
| Q |
201 |
agcttggtaaataaacaggggagagatggttttgttagtagcaaattgagtttgagagaaatgggaagtgaaaaagagaatggagtgttctacttgagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50507431 |
agcttggtaaataaacaggggagagatggttttgttagtagcaaattgagtttgagagaaatgggaagtgaaaaagagaatggagtgttctacttgagat |
50507332 |
T |
|
| Q |
301 |
accacattggacataagggcaagcatg |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
50507331 |
accacattggacataagggcaagcatg |
50507305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 55279782 - 55279840
Alignment:
| Q |
261 |
atgggaagtgaaaaagagaatggagtgttctacttgagataccacattggacataaggg |
319 |
Q |
| |
|
|||||||| ||| ||||||||| || |||||||||||||||| || |||| |||||||| |
|
|
| T |
55279782 |
atgggaagcgaagaagagaatgcagagttctacttgagatactacgttggtcataaggg |
55279840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University