View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_17 (Length: 341)
Name: NF10456_low_17
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 203 - 325
Target Start/End: Complemental strand, 37572822 - 37572701
Alignment:
| Q |
203 |
caaatacaaataaaacatataaatcaatctttgaagttttttacatacaatgaagaagaagaagnnnnnnngaaactaagcatagtgtaatactccctaa |
302 |
Q |
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| T |
37572822 |
caaatacaaataaaacatataaatcaatctttgaagttttttacatacaatgaagaagaagaa-aaaaaaagaaactaagcatagtgtaatactccctaa |
37572724 |
T |
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| Q |
303 |
acattaaaattaaagtataactt |
325 |
Q |
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| T |
37572723 |
acattaaaattaaagtataactt |
37572701 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 37572912 - 37572880
Alignment:
| Q |
60 |
aaacattttaatattgaatgtatgtttaaaata |
92 |
Q |
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| T |
37572912 |
aaacattttaatattgaatgtatgtgtaaaata |
37572880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35050075 - 35050038
Alignment:
| Q |
1 |
tcttttcattgttgatacatttgtgttatttctcacgt |
38 |
Q |
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| T |
35050075 |
tcttttcattgttgatacatttgagttatttctcacgt |
35050038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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