View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_20 (Length: 311)
Name: NF10456_low_20
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 40764496 - 40764778
Alignment:
| Q |
17 |
aacgtttcatttcatataatacaatgaaacactatctatcaagttaaatcctattctaaccgagctgcataatactttgcaaaattttggaaatgaatca |
116 |
Q |
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| T |
40764496 |
aacgtttcatttcatata-tacaatgaaacactatctatcaagttaaatcctattctaaccgagctgcataatactttgcaaaattttggaaatgaatca |
40764594 |
T |
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| Q |
117 |
acatgatggattgcatctaatggaagttcaggccaattatactttagatgagaattgtctaatgtttgtatacagttctcatctaccatatcaagtggat |
216 |
Q |
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| T |
40764595 |
acatgatggattgcatctaatggaagttcaggccaattatactttagatgagaactgtctaatgtttgtatacagttctcatctaccatatcaagtggat |
40764694 |
T |
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| Q |
217 |
taatttgttctaacaggagaaggagggggactgtagcttttaagtttagtttccggttcagatgctgcttttagagttcttctt |
300 |
Q |
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| T |
40764695 |
taatttgttctaacaggagaaggagggggactgtagcttttaagtttagtttccggttcagatgctgcttttagagttcttctt |
40764778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 40770483 - 40770535
Alignment:
| Q |
101 |
ttttggaaatgaatcaacatgatggattgcatctaatggaagttcaggccaat |
153 |
Q |
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| T |
40770483 |
ttttggagatgaatcaacatgatggattggatctaaccgaagttcaggccaat |
40770535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 40777374 - 40777434
Alignment:
| Q |
218 |
aatttgttctaacaggagaaggagggggactgtagcttttaagtttagtttccggttcaga |
278 |
Q |
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| T |
40777374 |
aatttgttctaataggagaaggaggggcactatagcttttctgtttagtttcgggttcaga |
40777434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 10128251 - 10128350
Alignment:
| Q |
35 |
atacaatgaaacactatctatcaagttaaatcctattctaaccgagctgcataatactttgcaaaattttggaaatgaatcaacatgatggattgcatct |
134 |
Q |
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| T |
10128251 |
atacaatgaagcactatctatcaagttaaatctcattctagctgagctgcttagtactcaacacgatttcggaatcgaatcaacataatggattgtatct |
10128350 |
T |
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