View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10456_low_22 (Length: 297)

Name: NF10456_low_22
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10456_low_22
NF10456_low_22
[»] chr3 (9 HSPs)
chr3 (57-297)||(50507768-50508008)
chr3 (1-58)||(50509692-50509749)
chr3 (163-293)||(31608195-31608333)
chr3 (163-292)||(23483133-23483270)
chr3 (213-295)||(18167949-18168031)
chr3 (164-297)||(24989759-24989896)
chr3 (177-282)||(41589409-41589509)
chr3 (177-269)||(33393118-33393209)
chr3 (204-269)||(47097654-47097720)
[»] chr8 (8 HSPs)
chr8 (57-295)||(1848377-1848629)
chr8 (92-203)||(32910916-32911026)
chr8 (177-282)||(39713255-39713355)
chr8 (211-292)||(43576177-43576258)
chr8 (204-269)||(7969381-7969447)
chr8 (89-145)||(44953554-44953610)
chr8 (211-288)||(35979412-35979490)
chr8 (89-149)||(35979556-35979616)
[»] chr6 (8 HSPs)
chr6 (162-294)||(17314864-17315004)
chr6 (204-294)||(6675233-6675324)
chr6 (231-295)||(14253136-14253201)
chr6 (255-294)||(26181118-26181157)
chr6 (221-294)||(26947195-26947268)
chr6 (173-282)||(7082108-7082225)
chr6 (205-282)||(29880782-29880859)
chr6 (173-203)||(8810218-8810248)
[»] chr4 (4 HSPs)
chr4 (163-291)||(15506388-15506524)
chr4 (163-291)||(7818269-7818405)
chr4 (211-291)||(1536828-1536907)
chr4 (221-291)||(7795197-7795268)
[»] chr1 (8 HSPs)
chr1 (204-295)||(45926102-45926194)
chr1 (231-293)||(9263495-9263558)
chr1 (177-282)||(24527073-24527173)
chr1 (177-282)||(32117385-32117497)
chr1 (240-295)||(51547083-51547138)
chr1 (204-282)||(45942122-45942200)
chr1 (177-269)||(3486344-3486435)
chr1 (240-281)||(51546644-51546685)
[»] chr7 (8 HSPs)
chr7 (163-295)||(41469538-41469679)
chr7 (240-291)||(40524823-40524874)
chr7 (123-291)||(21202976-21203152)
chr7 (103-297)||(34012743-34012941)
chr7 (89-149)||(37544791-37544851)
chr7 (240-281)||(22114119-22114160)
chr7 (231-295)||(37544872-37544937)
chr7 (240-281)||(40525281-40525322)
[»] chr2 (4 HSPs)
chr2 (204-293)||(35006313-35006403)
chr2 (204-282)||(31639864-31639942)
chr2 (177-282)||(40658629-40658729)
chr2 (57-86)||(35006196-35006225)
[»] scaffold0570 (1 HSPs)
scaffold0570 (163-292)||(3844-3981)
[»] chr5 (2 HSPs)
chr5 (242-293)||(6733389-6733440)
chr5 (204-282)||(18522729-18522807)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 57 - 297
Target Start/End: Complemental strand, 50508008 - 50507768
Alignment:
Q  57 ttaagttaacctcaacaatgtaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataacnnn 156  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       
T  50508008 ttaagttaacctcaacaatttaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcactgtgcataacatatcaatgttgaacaataacaaa 50507909  T
Q  157 nnnnttgaaactctaacatcattgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcacttttaatcttctacaaag 256  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50507908 aaaattgaaactctaacatcattgaaaaagaagaagaaattcacttagcaatcaagtatggatgaaagatgttatgattcacttttaatcttctacaaag 50507809  T
Q  257 attgattgaacattcatgattgtttgtgggtgaaagaggat 297  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  50507808 attgattgaacattcatgattgtttgtgggtgaaagaggat 50507768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50509749 - 50509692
Alignment:
Q  1 attaagagagaggccatgttatggcttgggaaattagatcgcaagttagtggtggatt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50509749 attaagagagaggccatgttatggcttgggaaattagatcgcaagttagtggtggatt 50509692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 31608195 - 31608333
Alignment:
Q  163 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaa 254  Q
    ||||||||| |||||||| ||||||||||||||||||||||       ||||| |||||||||| ||||||| | ||||| | | |||||||||||| |     
T  31608195 gaaactctagcatcattggaaaagaagaagaaattcacttacttatatgcaataaagtatggatgaaagatgctttgatttattctttaatcttctatag 31608294  T
Q  255 agattgattgaacattcatgattgtttgtgggtgaaaga 293  Q
    ||||||||||||||| ||||||||||  |||||||||||    
T  31608295 agattgattgaacatccatgattgttcctgggtgaaaga 31608333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 23483133 - 23483270
Alignment:
Q  163 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaa 254  Q
    ||||||||| ||||| ||||||||||||||||||||| |||       |||||  ||||||||  ||||||||| ||||||||| |||||||||||| |     
T  23483133 gaaactctagcatcaatgaaaaagaagaagaaattcaattatttatatgcaatagagtatggacgaaagatgttttgattcactctttaatcttctatat 23483232  T
Q  255 agattgattgaacattcatgattgtttgtgggtgaaag 292  Q
    ||||||||||| ||| ||| |||||||||||| |||||    
T  23483233 agattgattgaccatccataattgtttgtgggggaaag 23483270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 18168031 - 18167949
Alignment:
Q  213 tatggataaaagatgttatgattcacttttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagagg 295  Q
    ||||||| ||||||| | |||||||||||||||||| || | | ||||||||||||| ||||||| |||||||||||||||||    
T  18168031 tatggatgaaagatgctttgattcacttttaatcttttatataaattgattgaacatccatgattctttgtgggtgaaagagg 18167949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 24989896 - 24989759
Alignment:
Q  164 aaactctaacatcattgaaaaagaagaagaaattcacttagcaat---caagtatggataaaagatgttatgattcact-tttaatcttctacaaagatt 259  Q
    |||||| | ||||||||||||||||||||||||| |||||   ||   ||||||| | | ||||||| | ||||| ||| |||||||||||| | |||||    
T  24989896 aaactccagcatcattgaaaaagaagaagaaatttacttacatatatgcaagtatcgttgaaagatgctttgattaactctttaatcttctatagagatt 24989797  T
Q  260 gattgaacattcatgattgtttgtgggtgaaagaggat 297  Q
    ||||||||||  ||||||||| ||| ||||||| ||||    
T  24989796 gattgaacatctatgattgttcgtgagtgaaagtggat 24989759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 41589409 - 41589509
Alignment:
Q  177 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatga 275  Q
    ||||||||||||||||||||||     ||| || ||||||||| ||||||||| ||||||||| |||||||||| | | |||||||||||||| ||| ||    
T  41589409 attgaaaaagaagaagaaattc-----gcagtcgagtatggatgaaagatgttttgattcactctttaatcttccatagagattgattgaaca-tcagga 41589502  T
Q  276 ttgtttg 282  Q
    |||||||    
T  41589503 ttgtttg 41589509  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 33393118 - 33393209
Alignment:
Q  177 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttct---acaaagattgattgaacat 269  Q
    ||||||||||||||||||||||     |||||| ||||||||| ||| ||||| ||||||||| |||||||||||   ||| |||||||||||||||    
T  33393118 attgaaaaagaagaagaaattc-----gcaatcgagtatggatgaaaaatgttttgattcactctttaatcttctataacagagattgattgaacat 33393209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 47097720 - 47097654
Alignment:
Q  204 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacat 269  Q
    |||||||||||||||| |||| |||| ||||||| | |||||||||| | |||||||||||||||||    
T  47097720 gcaatcaagtatggatgaaaggtgttttgattcattctttaatcttccataaagattgattgaacat 47097654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 295
Target Start/End: Complemental strand, 1848629 - 1848377
Alignment:
Q  57 ttaagttaacctcaacaatgtaaattaa------cgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaat 150  Q
    |||||||||||||||| |||||||||||      ||| || |||||||||||||||||||| ||| ||| | || || ||||||||||| |||||||||     
T  1848629 ttaagttaacctcaacgatgtaaattaatgttaacgcatgtgtgttgcaccatcaaataaccgtcgttgtaaagggcgtaacatatcaacgttgaacaac 1848530  T
Q  151 aacnnnnnnnttgaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-ttt 242  Q
    ||         |||||||||| ||||||||||||||||||||||| ||| |||       |||||||||||||||| ||| ||||| |||| |||| |||    
T  1848529 aagataaaaaatgaaactctagcatcattgaaaaagaagaagaaactcatttacttatatgcaatcaagtatggatgaaatatgttttgatccactcttt 1848430  T
Q  243 aatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagagg 295  Q
    ||||||||| ||| ||||||||||||| ||||||||| || || |||||||||    
T  1848429 aatcttctataaatattgattgaacatccatgattgtctgcggatgaaagagg 1848377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 32910916 - 32911026
Alignment:
Q  92 gtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataacnnnnnnnttgaaactctaacatcattgaaaaagaagaa 191  Q
    |||||||||||||||||||| ||||| | | ||| ||||||||||||||||||||||| ||        | ||||||| |||||||||||| |  |||||    
T  32910916 gtgttgcaccatcaaataaccgtcatcgtagagttcataacatatcaatgttgaacaacaa-gaaaaaatagaaactcaaacatcattgaatataaagaa 32911014  T
Q  192 gaaattcactta 203  Q
    ||||||||||||    
T  32911015 gaaattcactta 32911026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 39713255 - 39713355
Alignment:
Q  177 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatga 275  Q
    ||||||||||||||||||||||     |||||| ||||||||| ||||||||| ||||||||| |||||||||| | |   |||||||||||| ||||||    
T  39713255 attgaaaaagaagaagaaattc-----gcaatcgagtatggatgaaagatgttttgattcactctttaatcttccataggaattgattgaaca-tcatga 39713348  T
Q  276 ttgtttg 282  Q
    |||||||    
T  39713349 ttgtttg 39713355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 43576258 - 43576177
Alignment:
Q  211 agtatggataaaagatgttatgattcacttttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaag 292  Q
    ||||||||| ||||||||| ||||||||||||| | || ||   |||||| |||||||| ||||||||||||||| ||||||    
T  43576258 agtatggatgaaagatgttttgattcacttttattattttatggagattggttgaacatccatgattgtttgtggatgaaag 43576177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 7969447 - 7969381
Alignment:
Q  204 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacat 269  Q
    |||||||||||||||| ||||| ||| ||||||||| |||||||||| | | |||||||||||||||    
T  7969447 gcaatcaagtatggatgaaagaagttttgattcactctttaatcttccatagagattgattgaacat 7969381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 44953554 - 44953610
Alignment:
Q  89 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttga 145  Q
    ||||||||||||||||||||||| ||| ||| | ||| ||||||||||||| |||||    
T  44953554 tgcgtgttgcaccatcaaataaccgtcgttgtaaagttcataacatatcaacgttga 44953610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 35979490 - 35979412
Alignment:
Q  211 agtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtg 288  Q
    ||||||||| |||||| || ||||||| | ||||||||| |  | ||||||||||||||| ||||||| ||||||||||    
T  35979490 agtatggatgaaagatattttgattcagtctttaatcttttttagagattgattgaacatccatgattatttgtgggtg 35979412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 35979616 - 35979556
Alignment:
Q  89 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 149  Q
    ||||||||||||||||||||| |  | |||| | ||| ||||||||||||| |||||||||    
T  35979616 tgcgtgttgcaccatcaaatagccttgattgtagagttcataacatatcaacgttgaacaa 35979556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 162 - 294
Target Start/End: Original strand, 17314864 - 17315004
Alignment:
Q  162 tgaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctaca 253  Q
    |||||||||  ||||||||||||||||||||||||||| |||       |||||  ||||||||| ||| ||||| ||||||||| ||||||| | || |    
T  17314864 tgaaactcttgcatcattgaaaaagaagaagaaattcagttacttatatgcaatagagtatggatgaaatatgttttgattcactctttaatcctttata 17314963  T
Q  254 aagattgattgaacattcatgattgtttgtgggtgaaagag 294  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  17314964 aagattgattgaacattcatgattgtttgtggctgaaagag 17315004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 6675324 - 6675233
Alignment:
Q  204 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagag 294  Q
    |||||| ||||||||| ||||||||| ||||||||| |||||||||||| | ||||||||||||||| ||||||| ||||| ||||||||||    
T  6675324 gcaatcgagtatggatgaaagatgttttgattcactctttaatcttctatagagattgattgaacatccatgattatttgttggtgaaagag 6675233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 14253201 - 14253136
Alignment:
Q  231 tgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagagg 295  Q
    ||||||||| ||||||||| || | ||||||||||||||| |||||||||||||||||||||||||    
T  14253201 tgattcactctttaatcttttatagagattgattgaacatccatgattgtttgtgggtgaaagagg 14253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 26181157 - 26181118
Alignment:
Q  255 agattgattgaacattcatgattgtttgtgggtgaaagag 294  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26181157 agattgattgaacattcatgattgtttgtgggtgaaagag 26181118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 26947268 - 26947195
Alignment:
Q  221 aaagatgttatgattcactttt-aatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagag 294  Q
    ||||||||| ||||||||| || ||||||||| | |||||||||||| || ||||||||||||||||||||||||    
T  26947268 aaagatgttttgattcactcttcaatcttctatagagattgattgaa-atccatgattgtttgtgggtgaaagag 26947195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 7082108 - 7082225
Alignment:
Q  173 catcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattg 264  Q
    |||||||||||||||||||||||||||||||       |||||| ||| ||||| | |||| || ||||||||| |||||||||| |   ||||||||||    
T  7082108 catcattgaaaaagaagaagaaattcacttacttatatgcaatcgagtttggatgagagatattttgattcactctttaatcttccatgtagattgattg 7082207  T
Q  265 aacattcatgattgtttg 282  Q
    |||||  |||||||||||    
T  7082208 aacatggatgattgtttg 7082225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 29880859 - 29880782
Alignment:
Q  205 caatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg 282  Q
    ||||| |||||| |||||||||||| ||||||||| |||||||||| | ||||||| |||||||| ||| |||||||||    
T  29880859 caatcgagtatgaataaaagatgttttgattcactctttaatcttccataaagattaattgaaca-tcaggattgtttg 29880782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 8810248 - 8810218
Alignment:
Q  173 catcattgaaaaagaagaagaaattcactta 203  Q
    |||||||||||||||||||||||||||||||    
T  8810248 catcattgaaaaagaagaagaaattcactta 8810218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 15506388 - 15506524
Alignment:
Q  163 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaa 254  Q
    ||||||||| ||||||||||||||||||||||||||| |||       |||||  |||||| || ||||||||| ||||||||| |||||||||||| ||    
T  15506388 gaaactctagcatcattgaaaaagaagaagaaattcaattacttatatgcaatagagtatgaatgaaagatgttttgattcactctttaatcttctataa 15506487  T
Q  255 agattgattgaacattcatgattgtttgtgggtgaaa 291  Q
    |||||||  ||||||| ||||||||||||||||||||    
T  15506488 agattgaccgaacattaatgattgtttgtgggtgaaa 15506524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 7818269 - 7818405
Alignment:
Q  163 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaa 254  Q
    ||||||||| ||||||||||||||||| ||||||||| |||       ||| |  ||||| ||| |||||||||  |||||||| ||||||||| || |     
T  7818269 gaaactctagcatcattgaaaaagaaggagaaattcaattacttatatgcattagagtatagatgaaagatgtttcgattcactctttaatcttttatag 7818368  T
Q  255 agattgattgaacattcatgattgtttgtgggtgaaa 291  Q
    | ||||| |||||||||||||||||||||||||||||    
T  7818369 aaattgactgaacattcatgattgtttgtgggtgaaa 7818405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 1536828 - 1536907
Alignment:
Q  211 agtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaa 291  Q
    ||||||||| ||||||||| | ||||||| ||||||||||||  | |||||||||||||| ||||||| |||||||||||||    
T  1536828 agtatggatgaaagatgttttaattcactctttaatcttctatga-gattgattgaacatccatgatt-tttgtgggtgaaa 1536907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 7795197 - 7795268
Alignment:
Q  221 aaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaa 291  Q
    |||||||||  |||||||| |||| |||| || | | ||||| |||||||||||||||||||||||||||||    
T  7795197 aaagatgtttcgattcactctttattcttttatagaaattgactgaacattcatgattgtttgtgggtgaaa 7795268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 45926102 - 45926194
Alignment:
Q  204 gcaatcaagtatggataaaagatgttatgattcactttt-aatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagagg 295  Q
    |||||| ||||||||| ||||||||| ||||||||| || ||||||||| | ||||||||||||||| |||||||||||| ||||||||||||    
T  45926102 gcaatcgagtatggatgaaagatgttttgattcactcttcaatcttctatagagattgattgaacatacatgattgtttgcgggtgaaagagg 45926194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 9263495 - 9263558
Alignment:
Q  231 tgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaaga 293  Q
    ||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||| |||||||    
T  9263495 tgattcactctttaatattctatagagattgattgaacattcatgattgtttgtggatgaaaga 9263558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 24527173 - 24527073
Alignment:
Q  177 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatga 275  Q
    ||||||||||||||||||||||     ||| || ||||||||| ||||||||| | ||||||| |||||||||| | |||||||||||||||| ||| ||    
T  24527173 attgaaaaagaagaagaaattc-----gcagtcgagtatggatgaaagatgttttaattcactctttaatcttccataaagattgattgaaca-tcagga 24527080  T
Q  276 ttgtttg 282  Q
    |||||||    
T  24527079 ttgtttg 24527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 32117497 - 32117385
Alignment:
Q  177 attgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaaca 268  Q
    ||||||||||||||| |||||||||||       ||||||||||||| || ||||||||| ||||||||| |||||||||| | | ||||| ||||||||    
T  32117497 attgaaaaagaagaaaaaattcacttatttatatgcaatcaagtatgaatgaaagatgttttgattcactctttaatcttccatagagattaattgaaca 32117398  T
Q  269 ttcatgattgtttg 282  Q
     ||| |||||||||    
T  32117397 -tcaggattgtttg 32117385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 51547138 - 51547083
Alignment:
Q  240 tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagagg 295  Q
    |||||||||||| | || |||||||||||| ||| |||||||||||||||||||||    
T  51547138 tttaatcttctatatagcttgattgaacatccataattgtttgtgggtgaaagagg 51547083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 45942122 - 45942200
Alignment:
Q  204 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg 282  Q
    |||||| |||||| || ||||||||| ||||||||| |||||||||||| | ||||| |||||||| ||| |||||||||    
T  45942122 gcaatcgagtatgaattaaagatgttttgattcactctttaatcttctatatagattaattgaaca-tcaggattgtttg 45942200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 3486344 - 3486435
Alignment:
Q  177 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttc---tacaaagattgattgaacat 269  Q
    ||||||||||||||||||||||     |||||| ||||||||| ||| ||||| ||||||||| ||||||||||    ||| |||||||||||||||    
T  3486344 attgaaaaagaagaagaaattc-----gcaatcgagtatggatgaaaaatgttttgattcactctttaatcttccgtaacagagattgattgaacat 3486435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 51546644 - 51546685
Alignment:
Q  240 tttaatcttctacaaagattgattgaacattcatgattgttt 281  Q
    |||||||||||| | ||||||||||||||||||| |||||||    
T  51546644 tttaatcttctatagagattgattgaacattcataattgttt 51546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 295
Target Start/End: Complemental strand, 41469679 - 41469538
Alignment:
Q  163 gaaactctaacatcatt-gaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctaca 253  Q
    ||||||||| ||||||| ||||||||||||||||||||||||       |||| | | ||||||| ||||||||| ||||||||  |||||||||||| |    
T  41469679 gaaactctagcatcatttgaaaaagaagaagaaattcacttatttatatgcaaccgaatatggatgaaagatgttttgattcaccctttaatcttctata 41469580  T
Q  254 aagattgattgaacattcatgattgtttgtgggtgaaagagg 295  Q
     ||||||||||||||||||| |||||||||  ||||||||||    
T  41469579 gagattgattgaacattcataattgtttgtatgtgaaagagg 41469538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 40524823 - 40524874
Alignment:
Q  240 tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaa 291  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  40524823 tttaatcttctacagagattgattgaacatccatgattgtttgtgggtgaaa 40524874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 291
Target Start/End: Complemental strand, 21203152 - 21202976
Alignment:
Q  123 agtgcataacatatcaatgttgaacaataacnnnnnnnttgaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtat 215  Q
    ||||||||||||||||| ||||||||| ||        | ||||||||  |||||||||||||||| |||||||||| |||       |||||  |||||    
T  21203152 agtgcataacatatcaacgttgaacaacaagaataaaatagaaactcttgcatcattgaaaaagaataagaaattcaattacttatatgcaatagagtat 21203053  T
Q  216 ggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaa 291  Q
     ||| ||||||||| ||||| | | |||||| ||||| | ||||||||||||| | |||||||||||||||||||||    
T  21203052 agatgaaagatgttttgatttattatttaatattctatagagattgattgaacgtccatgattgtttgtgggtgaaa 21202976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 297
Target Start/End: Complemental strand, 34012941 - 34012743
Alignment:
Q  103 tcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataacnnnnnnnttgaaactctaacatcattgaaaaagaagaagaaattcactt 202  Q
    ||||||||||||| ||| | ||| ||||||||||||| ||||||||| ||        | ||||||||||||||||||||| | |  || |||   ||||    
T  34012941 tcaaataactgtcgttgtagagttcataacatatcaacgttgaacaacaagaaaaaaatagaaactctaacatcattgaaagaaagaaaaaaacgtactt 34012842  T
Q  203 a---gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagaggat 297  Q
    |   |||||  | |||||||  |||||||| ||||||||| ||||||||| || | |||||||||||||||  ||||||||||||||||| ||| ||||    
T  34012841 atatgcaatagaatatggatggaagatgttttgattcactctttaatcttttatagagattgattgaacatctatgattgtttgtgggtgtaagcggat 34012743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 37544791 - 37544851
Alignment:
Q  89 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 149  Q
    |||||| |||||||||||||||| ||| ||| | ||| ||||||||||||| |||||||||    
T  37544791 tgcgtgctgcaccatcaaataaccgtcgttgtagagttcataacatatcaacgttgaacaa 37544851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 22114119 - 22114160
Alignment:
Q  240 tttaatcttctacaaagattgattgaacattcatgattgttt 281  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  22114119 tttaatcttctatagagattgattgaacatccatgattgttt 22114160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 37544872 - 37544937
Alignment:
Q  231 tgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaagagg 295  Q
    ||||||||| ||||||||| || |  |||||||||||||| ||| ||||||| |||||||||||||    
T  37544872 tgattcactctttaatcttttatagtgattgattgaacatccataattgtttatgggtgaaagagg 37544937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 40525322 - 40525281
Alignment:
Q  240 tttaatcttctacaaagattgattgaacattcatgattgttt 281  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  40525322 tttaatcttctatagagattgattgaacatccatgattgttt 40525281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 35006313 - 35006403
Alignment:
Q  204 gcaatcaagtatggataaaagatgttatgattcactttt-aatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaaga 293  Q
    |||||| | ||| ||| ||||||||| ||||||||| || ||||||||| | ||||||||||||||| ||||||||||||||| |||||||    
T  35006313 gcaatcgaatatagatgaaagatgttttgattcactcttcaatcttctatagagattgattgaacatccatgattgtttgtggatgaaaga 35006403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 31639942 - 31639864
Alignment:
Q  204 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg 282  Q
    |||||| ||||||||| ||||||||| ||||||||| |||||||||| | | |||||||||||||| ||| |||||||||    
T  31639942 gcaatcgagtatggatgaaagatgttttgattcactctttaatcttccatagagattgattgaaca-tcaggattgtttg 31639864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 40658729 - 40658629
Alignment:
Q  177 attgaaaaagaagaagaaattcacttagcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatga 275  Q
    ||||||||||||||||||||||     ||| |  ||||||||| |||||| || ||||||||| |||||||||| | | |||||||||||||| ||| ||    
T  40658729 attgaaaaagaagaagaaattc-----gcagttgagtatggatgaaagatattttgattcactctttaatcttccatagagattgattgaaca-tcagga 40658636  T
Q  276 ttgtttg 282  Q
    |||||||    
T  40658635 ttgtttg 40658629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 35006196 - 35006225
Alignment:
Q  57 ttaagttaacctcaacaatgtaaattaacg 86  Q
    ||||||||||||||||||||||||||||||    
T  35006196 ttaagttaacctcaacaatgtaaattaacg 35006225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 3981 - 3844
Alignment:
Q  163 gaaactctaacatcattgaaaaagaagaagaaattcactta-------gcaatcaagtatggataaaagatgttatgattcactttt-aatcttctacaa 254  Q
    ||||||||  ||||| ||||||||||||||||||||| |||       |||||  ||||||||  |||||| || |||||||||||| ||||||||| |     
T  3981 gaaactcttgcatcaatgaaaaagaagaagaaattcaattatttatatgcaatagagtatggacgaaagatattttgattcactttttaatcttctatag 3882  T
Q  255 agattgattgaacattcatgattgtttgtgggtgaaag 292  Q
    ||||||||||| ||| ||| |||||||| || ||||||    
T  3881 agattgattgaccatccataattgtttgcggatgaaag 3844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 6733389 - 6733440
Alignment:
Q  242 taatcttctacaaagattgattgaacattcatgattgtttgtgggtgaaaga 293  Q
    |||||||||| | ||||||||||||||||||| ||| |||||||||||||||    
T  6733389 taatcttctatagagattgattgaacattcataattatttgtgggtgaaaga 6733440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 18522729 - 18522807
Alignment:
Q  204 gcaatcaagtatggataaaagatgttatgattcact-tttaatcttctacaaagattgattgaacattcatgattgtttg 282  Q
    ||||||||||||| || ||||||||| ||||||||| |||||||||| | | ||||| |||||||| ||| |||||||||    
T  18522729 gcaatcaagtatgaatgaaagatgttttgattcactctttaatcttccatatagattaattgaaca-tcaggattgtttg 18522807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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