View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_23 (Length: 294)
Name: NF10456_low_23
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 19597285 - 19597012
Alignment:
| Q |
12 |
catcaacaccatcacctacagtatcgccaccatcatcaccatcaccataccattctaatttttcatcgagtcacattcgtcctccatggcctcgttcagt |
111 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19597285 |
catcaacaccatcaccaacagtatcaccaccatcatcaccattaccataccattctaatttttcatcgagtcacattcgtcctccatggcctcgttcagt |
19597186 |
T |
|
| Q |
112 |
gaacccaccaccaatatatcattcagtgatccctagaagatacccactaggacgaccatcaacaccatcaccaacagtatcaccaccatcatcaccatta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19597185 |
gaacccaccaccaatatatcattcagtgatccctagaagatacccatcaggacgaccatcaacaccatcaccaacagtatcaccaccatcatcaccatta |
19597086 |
T |
|
| Q |
212 |
cgaagagcatcacaatctaatgaacaacataatatgcagatcattgatccagttgaaatcttcatagcctttgc |
285 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
19597085 |
cgaagagcatcgcaatctaatgaacaagataatatgcagatcattgatccaattgaaatcttcatagtctttgc |
19597012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 19597287 - 19597241
Alignment:
| Q |
166 |
accatcaacaccatcaccaacagtatcaccaccatcatcaccattac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19597287 |
accatcaacaccatcaccaacagtatcaccaccatcatcaccattac |
19597241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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