View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_24 (Length: 286)
Name: NF10456_low_24
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_24 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 27532605 - 27532874
Alignment:
| Q |
1 |
tacacaatcagtaaattaattttaaatgatctcggttgttgatttgcaattggacaaccaagatctctaactacgtcacagcagatctatttccatactg |
100 |
Q |
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| T |
27532605 |
tacacaatcagtaaattaattttaaatgatctcggttgttgatttgcaattggacaaccaagatctctaactgcgtcacagcagatctatttccgtattg |
27532704 |
T |
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| Q |
101 |
tactgtacttcatttttcactggttcaccggtgaaggtttactgcaggctcctcttcttctaggctgtgatgttagaaatgtgactaaagagaccttgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27532705 |
tactgtacttcatttttcactggttcaccggtgaaggtttattgcaggctcctcttcttctaggctgtgatgttagaaatgtgactaaagagaccttgga |
27532804 |
T |
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| Q |
201 |
gatagtttctaataaggaagttattgcagttaaccaaggtgatgcataatttgtcattttgcgattttct |
270 |
Q |
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| T |
27532805 |
gatagtttctaataaggaagttattgcagttaaccaaggtgatgcataatttgtcattttgcgattttct |
27532874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 132 - 267
Target Start/End: Original strand, 27526966 - 27527103
Alignment:
| Q |
132 |
tgaaggtttactgcaggctcctcttcttctaggctgtgatgttagaaatgtgactaaagagaccttggagatagtttctaataaggaagttattgcagtt |
231 |
Q |
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| T |
27526966 |
tgaaggtttattgcaggctcctcttcttctaggttgtgatgttagaaatgtgactaaagagaccatggagatagtctctaataaggaagttattgcagtt |
27527065 |
T |
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| Q |
232 |
aaccaaggtgatgcataattt--gtcattttgcgattt |
267 |
Q |
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| T |
27527066 |
aaccaaggtgatgcataatttgagtcattttgtgattt |
27527103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 132 - 267
Target Start/End: Original strand, 20847 - 20984
Alignment:
| Q |
132 |
tgaaggtttactgcaggctcctcttcttctaggctgtgatgttagaaatgtgactaaagagaccttggagatagtttctaataaggaagttattgcagtt |
231 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
20847 |
tgaaggtttattgcaggctcctcttcttctaggttgtgatgttagaaatgtgactaaagagaccatggagatagtctctaataaggaagttattgcagtt |
20946 |
T |
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| Q |
232 |
aaccaaggtgatgcataattt--gtcattttgcgattt |
267 |
Q |
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| T |
20947 |
aaccaaggtgatgcataatttgagtcattttgtgattt |
20984 |
T |
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