View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_25 (Length: 280)
Name: NF10456_low_25
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 32450905 - 32451071
Alignment:
| Q |
14 |
agatgtatggtaattgaaaacattcaagaactt-cctttgataatattagaaaggaaaaaccgtgaaggaagagagaagagagtaattcatattcttaaa |
112 |
Q |
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| T |
32450905 |
agatgtatggtgattgaaaacattcaagagctttcctttgataatattagaaaggaaaaaccgtgaagggagagagaagagagtaattcatattcttaaa |
32451004 |
T |
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| Q |
113 |
tgagacggagagcaagagcagccccagtttgaac---------gaaatcgatattatacttgggcca |
170 |
Q |
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| T |
32451005 |
tgagatggagagaaagagcagccccagtttgaactaaggggaggaaatcgatattatacttgggcca |
32451071 |
T |
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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 9102691 - 9102605
Alignment:
| Q |
175 |
aggtttttcttatattctttacacatataataaattattgaactctaaattacaaattgagaaaattatagaaaagaacagatataa |
261 |
Q |
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| T |
9102691 |
aggtttttcttaaattctttacacatataataaattattgaactctaaattacaaattgagaaaattatagaaaagaacaggtataa |
9102605 |
T |
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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 12932356 - 12932453
Alignment:
| Q |
14 |
agatgtatggtaattgaaaa-cattcaagaactt-cctttgataatattagaaaggaaaaaccgtgaaggaagagagaagagagtaattcatattctt |
109 |
Q |
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| T |
12932356 |
agatgtatggtaattgaaaaacattcaagagctttcctttgataatattagaaaggaaaaaccgtgaaggaagagagaagagagtaattcatattctt |
12932453 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 1818889 - 1818941
Alignment:
| Q |
202 |
taataaattattgaactctaaattacaaattgagaaaattatagaaaagaaca |
254 |
Q |
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| T |
1818889 |
taataaattattgaacactaaattacaaattgagaaaattctataaaagaaca |
1818941 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 42639982 - 42639903
Alignment:
| Q |
175 |
aggtttttcttatattctttacacatataataaattattgaactctaaattacaaattgagaaaattatagaaaagaaca |
254 |
Q |
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| T |
42639982 |
aggtttttcttaaattctttacacatataataaattattgaacactaaattacaaattgagataattatagaaaagaaca |
42639903 |
T |
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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 40730655 - 40730734
Alignment:
| Q |
175 |
aggtttttcttatattctttacacatataataaattattgaactctaaattacaaattgagaaaattatagaaaagaaca |
254 |
Q |
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|||||||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||| |
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| T |
40730655 |
aggtttttcttaaattctttatgcatataataaattatttaacactaaattacaaattgagaaaattctataaaagaaca |
40730734 |
T |
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