View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_27 (Length: 249)
Name: NF10456_low_27
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 48839267 - 48839505
Alignment:
| Q |
1 |
tgtctagttactaactaccgtagaatttgacttttcacgatatgcgtacataacacaacacaacataaacacgtgcattcttttgtttcatttatttgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48839267 |
tgtctagttactaactaccgtagaatttgacttttcacgatatgcgtacataacacaacacaacataaacacatgcattcttttgtttcatttatttgtt |
48839366 |
T |
|
| Q |
101 |
catgttctatgcttgtttgtcgctttgtacaccccaaacaggaacttaaggtgataattacaaataaggtaatttttaggatgattgtgatttattcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48839367 |
catgttctatgcttgtttgtcgctttgtacaccccaaacaggaacttaaggtgataattacaaataaggtgatttttaggatgattgtgatttattcctc |
48839466 |
T |
|
| Q |
201 |
aactattgagagtgttttactaaaatttaagatcctttg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
48839467 |
aactattgagagtgttttactaaaatttaagatcctttg |
48839505 |
T |
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