View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10456_low_30 (Length: 239)

Name: NF10456_low_30
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10456_low_30
NF10456_low_30
[»] chr7 (4 HSPs)
chr7 (1-223)||(1460562-1460785)
chr7 (76-161)||(29447156-29447244)
chr7 (79-175)||(24034286-24034385)
chr7 (79-178)||(39465240-39465340)
[»] chr8 (6 HSPs)
chr8 (78-223)||(32344951-32345099)
chr8 (78-223)||(32361559-32361707)
chr8 (105-204)||(12101086-12101185)
chr8 (79-172)||(37370140-37370236)
chr8 (76-187)||(9187650-9187764)
chr8 (89-145)||(16822511-16822570)
[»] chr1 (4 HSPs)
chr1 (76-180)||(27579155-27579260)
chr1 (101-209)||(25222048-25222156)
chr1 (139-192)||(43880116-43880169)
chr1 (77-158)||(30828602-30828682)
[»] chr2 (1 HSPs)
chr2 (79-187)||(31555410-31555521)
[»] chr4 (2 HSPs)
chr4 (79-209)||(24637936-24638069)
chr4 (86-187)||(33359248-33359352)
[»] chr6 (1 HSPs)
chr6 (102-187)||(4115667-4115752)
[»] chr5 (1 HSPs)
chr5 (79-196)||(43101604-43101724)
[»] scaffold0092 (1 HSPs)
scaffold0092 (140-204)||(6806-6870)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1460562 - 1460785
Alignment:
Q  1 gcaacaatcacgctatgaatatatgtccagttgttttcttttatctttnnnnnnnngtgtgacaaactagatgat-aagtatatgtcactataaatataa 99  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||        |||| |||||||||||||| ||||||||||||||||||||||||    
T  1460562 gcaacaatcacgctatgaatatatgtccaattattttcttttatctttagaaaaaagtgtaacaaactagatgatcaagtatatgtcactataaatataa 1460661  T
Q  100 tcaagaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatcatcttaa 199  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1460662 tcaagaaaaggaaaattatcattcatacactgagataaaaaaatttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatcctcttaa 1460761  T
Q  200 aggtatgtcccactaacatgtgtg 223  Q
    ||||||||||||||||||||||||    
T  1460762 aggtatgtcccactaacatgtgtg 1460785  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 29447156 - 29447244
Alignment:
Q  76 aagtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattaga 161  Q
    ||||||||||||||||||||||||||||   ||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  29447156 aagtatatgtcactataaatataatcaataagaaaatgaaaattatcattgatacattgagataaaatattttcaaaggagcaattaga 29447244  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 24034385 - 24034286
Alignment:
Q  79 tatatgtcactataaatataatcaagaaaa---ggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 175  Q
    ||||||||||||||||||||||||| ||||   | |||||||||||  | |||||||||||   || ||| ||| ||||||||||| |||||||||||||    
T  24034385 tatatgtcactataaatataatcaataaaaaaagaaaaattatcatcgacacactgagatagtgtaattttaaaggagcaattagaaagtaaaatagtga 24034286  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 39465340 - 39465240
Alignment:
Q  79 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 175  Q
    |||||||||||||||||||| ||||   |||||| ||||||| |||  |||   ||||||| ||||||||| |||||||||| | |||||||||||||||    
T  39465340 tatatgtcactataaatatactcaataagaaaagaaaaattagcatcgatag--tgagatacaatattttctaatgagcaatcatagagtaaaatagtga 39465243  T
Q  176 ctc 178  Q
    |||    
T  39465242 ctc 39465240  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 32345099 - 32344951
Alignment:
Q  78 gtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtg 174  Q
    ||||||||||||||||| ||||||||   ||||| |||||||||||| |||||| | |||||||||||||| ||| |||||| || ||||||||||||||    
T  32345099 gtatatgtcactataaacataatcaataagaaaaagaaaattatcatccatacattaagataaaatatttttaaaggagcaaatatagagtaaaatagtg 32345000  T
Q  175 actcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtg 223  Q
    ||||||| ||||| ||| |||| ||||||| |||| | |||||| ||||    
T  32344999 actcttatcatatccataatctcaaaggtaagtcctattaacatatgtg 32344951  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 32361707 - 32361559
Alignment:
Q  78 gtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtg 174  Q
    ||||||||||||||||| ||||||||   ||||| |||||||||||| |||||| | |||||||||||||| ||| |||||| || ||||||||||||||    
T  32361707 gtatatgtcactataaacataatcaataagaaaaagaaaattatcatccatacattaagataaaatatttttaaaggagcaaatatagagtaaaatagtg 32361608  T
Q  175 actcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtg 223  Q
    ||||||| ||||| ||| |||| ||||||| |||| | |||||| ||||    
T  32361607 actcttatcatatccataatctcaaaggtaagtcctattaacatatgtg 32361559  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 12101086 - 12101185
Alignment:
Q  105 aaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatcatcttaaaggta 204  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||  |||||||| ||||||| |||| |||||||| ||||| |||||||| |||||||    
T  12101086 aaaagaaaaattatcatcaatacactgagataaaatattttcaaagtagcaattaaagagtaagatagcgactcttatcatatccatcatctgaaaggta 12101185  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 37370140 - 37370236
Alignment:
Q  79 tatatgtcactataaatataatcaagaaaagga---aaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatag 172  Q
    |||||||| |||||||||||||| | ||||| |   ||| ||||||| |||||||||||||||||||||| ||| |||||| ||||| |||||||||    
T  37370140 tatatgtcgctataaatataatcgataaaagaagggaaaatatcattaatacactgagataaaatatttttaaaggagcaactagagtgtaaaatag 37370236  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 9187650 - 9187764
Alignment:
Q  76 aagtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatag 172  Q
    ||||| ||||||||||||||||||||||   ||||| ||||  ||||||  ||| | |||||||||||||||||| | ||| |||||||| || |||||     
T  9187650 aagtacatgtcactataaatataatcaataagaaaatgaaacgtatcatcaatatattgagataaaatattttcataggagaaattagagtgttaaataa 9187749  T
Q  173 tgactcttaacatat 187  Q
     |||||||| |||||    
T  9187750 ggactcttatcatat 9187764  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 16822511 - 16822570
Alignment:
Q  89 tataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatatttt 145  Q
    |||||||||||||||   ||||||||||||||||||  |||||  |||||||||||||||    
T  16822511 tataaatataatcaataagaaaaggaaaattatcatcgatacatcgagataaaatatttt 16822570  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 27579260 - 27579155
Alignment:
Q  76 aagtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatag 172  Q
    ||||||||||| ||||||||||||||||   ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  27579260 aagtatatgtctctataaatataatcaattagaaaaagaaaattatcattgatacaccgagataaaatattttcaaatgagcaatt--agagtaaaatag 27579163  T
Q  173 tgactctt 180  Q
    ||||||||    
T  27579162 tgactctt 27579155  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 25222156 - 25222048
Alignment:
Q  101 caagaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatcatcttaaa 200  Q
    |||||| || |||||||||||  ||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| ||| ||| |||    
T  25222156 caagaatagcaaaattatcatctatacaatgagaaaaaatattttcaaatgagtaattagagaataaaatagtgacttttatcatatttatcctctcaaa 25222057  T
Q  201 ggtatgtcc 209  Q
    |||| ||||    
T  25222056 ggtaagtcc 25222048  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 43880116 - 43880169
Alignment:
Q  139 atattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatc 192  Q
    ||||||||||| ||||||||| |||||||| |||||||||||| ||||| ||||    
T  43880116 atattttcaaaggagcaattaaagagtaaattagtgactcttatcatatacatc 43880169  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 30828602 - 30828682
Alignment:
Q  77 agtatatgtcactataaatataatcaagaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaatt 158  Q
    ||||||||||| |||||||||||| ||  ||   |||||||||||| ||||||| | |||||||||||| ||| ||||||||    
T  30828602 agtatatgtcattataaatataattaatcaataaaaaattatcattgatacactcaaataaaatatttt-aaaggagcaatt 30828682  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 31555521 - 31555410
Alignment:
Q  79 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 175  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||  |||||||||||||||||||||||| | ||||||||| | |||||||||||||    
T  31555521 tatatgtcactataaatataaacaataagaaaaggaaaattatcatcgatacactgagataaaatattttcataggagcaattacatagtaaaatagtga 31555422  T
Q  176 ctcttaacatat 187  Q
    |||||| |||||    
T  31555421 ctcttatcatat 31555410  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 24637936 - 24638069
Alignment:
Q  79 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 175  Q
    |||||| || |||||||||||||||   |||||| |||||||| ||  |||||||| ||||||||||||||||||||||||||| |  ||||| ||||||    
T  24637936 tatatgccattataaatataatcaacaagaaaagaaaaattataatcaatacactgggataaaatattttcaaatgagcaattaaaatgtaaattagtga 24638035  T
Q  176 ctcttaacatattcatcatcttaaaggtatgtcc 209  Q
    || ||| ||||| |||||||| ||||||| ||||    
T  24638036 cttttatcatatccatcatctcaaaggtaagtcc 24638069  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 33359248 - 33359352
Alignment:
Q  86 cactataaatataatcaag--aaaaggaaaattatcattc-atacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaa 182  Q
    ||||||||||||||||||   ||||  ||||||||||||  |||||||||||||||||||||| |||  |||||||| |||||||||||||||||||||     
T  33359248 cactataaatataatcaattaaaaaaaaaaattatcatttgatacactgagataaaatatttttaaagaagcaattaaagagtaaaatagtgactcttat 33359347  T
Q  183 catat 187  Q
    |||||    
T  33359348 catat 33359352  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 4115667 - 4115752
Alignment:
Q  102 aagaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaacatat 187  Q
    |||||||| |||||||| ||  ||| ||| |||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||    
T  4115667 aagaaaagaaaaattattatcgatatactaagataaaatattttcataggagcaattacagagtaaaatagtgactcttatcatat 4115752  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 43101604 - 43101724
Alignment:
Q  79 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 175  Q
    ||||||||| |||||||||||| ||   ||||| || ||||||||   || || ||||||| ||||||| |||| || |||||| ||||||||||| | |    
T  43101604 tatatgtcaatataaatataattaataagaaaaagataattatcaacgattcaatgagatataatatttacaaaggaacaattacagagtaaaataataa 43101703  T
Q  176 ctcttaacatattcatcatct 196  Q
    || ||| ||||||||||||||    
T  43101704 cttttatcatattcatcatct 43101724  T

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Target: scaffold0092 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 6806 - 6870
Alignment:
Q  140 tattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatcatcttaaaggta 204  Q
    |||||| ||| || |||| ||||||||||||| ||||||||| |||||||||| ||| |||||||    
T  6806 tattttgaaaggatcaataagagagtaaaataatgactcttatcatattcatcctctcaaaggta 6870  T

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