View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_33 (Length: 227)
Name: NF10456_low_33
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 42850525 - 42850726
Alignment:
| Q |
1 |
accgagaagtctatatactagaagtggtgccatggtttttgtagtctagggtggccataatcatgttttagacgtgtagacaacatatatatattatctt |
100 |
Q |
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| T |
42850525 |
accgagaagtctatatactagaagtggtgccatggtttttgtagtctagggtggccataatcatgttttagacgtgtagacaac------atgttatctt |
42850618 |
T |
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| Q |
101 |
tctctttgactgatatggnnnnnnnnnnnnnnnnnnnnnnnaattgtgttatttaacaaacaattgatatatcatctttaacaaactcctttctattttg |
200 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42850619 |
tctctttgactgatatggtttttctgttttcttttttgtttaagagtgttatttaacaaacaattgatatatcatctttaacaaactcctttctattttg |
42850718 |
T |
|
| Q |
201 |
cacactat |
208 |
Q |
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|||||||| |
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| T |
42850719 |
cacactat |
42850726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 30941041 - 30940981
Alignment:
| Q |
27 |
gtgccatggtttttgtagtctagggtggccataatcatgttttagacgtgtagacaacatat |
88 |
Q |
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||||||||||||||||||| ||||| ||| |||||||||||||||| || |||||| ||||| |
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| T |
30941041 |
gtgccatggtttttgtagt-tagggcggcgataatcatgttttagaagtatagacatcatat |
30940981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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