View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_6 (Length: 485)
Name: NF10456_low_6
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 164 - 475
Target Start/End: Complemental strand, 2101806 - 2101494
Alignment:
| Q |
164 |
taataacactggttacaccaccaaaaactta-gacacataagattcaaatcgggtaaaagtgttcacacctaacatgtgtagtgtctaataagttagttc |
262 |
Q |
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| T |
2101806 |
taataacactggttacaccaccaaaaacttaagacacataagattcaaatcgggtaaaagtgt-cacacctaacatgtgtagtgtctaataaattagttc |
2101708 |
T |
|
| Q |
263 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaa-tcatataagccggtaaatataaactataagctcatgaaaacgtg |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
2101707 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaaatcatataagcctgtaaatataaactataagctcgtgaaaacgtg |
2101608 |
T |
|
| Q |
362 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101607 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaatttgcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
2101508 |
T |
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| Q |
462 |
gattcacctctctg |
475 |
Q |
| |
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|||||||||||||| |
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| T |
2101507 |
gattcacctctctg |
2101494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 2102233 - 2102059
Alignment:
| Q |
18 |
ccatcaaattcaaggatgcaagaacgctgcaagattttgtttatgtt-acttcatagataaa---------------------ccttag-agttaaacat |
94 |
Q |
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| T |
2102233 |
ccatcaaattcaaggatgcaagaacgctgcaagattttgtttatgtttacttcatagataaaatagagttatcatgatataaaccttaggagttaaacat |
2102134 |
T |
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| Q |
95 |
gacgggcaactccttatagaggatatcaatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
169 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102133 |
gatgggcaacgccttatagaggatatcaatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
2102059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 320 - 446
Target Start/End: Original strand, 39184928 - 39185054
Alignment:
| Q |
320 |
atataagccggtaaatataaactataagctcatgaaaacgtgaaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtt |
419 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
39184928 |
atataagccggtaaatataaactataagctcttgaaaacgtgaaaattacaaaacaaaactcttttaaaagcttataaaacataatccaaatttgcggtt |
39185027 |
T |
|
| Q |
420 |
tgccaaacagatcctaatcattcataa |
446 |
Q |
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||||||||||||||||| |||| |||| |
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| T |
39185028 |
tgccaaacagatcctaaccattgataa |
39185054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 39184848 - 39184892
Alignment:
| Q |
260 |
ttcaactaaagctacaaggttaaaattgagaatgaaaaatgataa |
304 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39184848 |
ttcaattaaagctacaaggttaaaattgagaatgaaaaatgataa |
39184892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 39184394 - 39184433
Alignment:
| Q |
164 |
taataacactggttacaccaccaaaaacttagacacataa |
203 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
39184394 |
taataacactagttacaccaccaaaaacttagacacataa |
39184433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 39183919 - 39183970
Alignment:
| Q |
74 |
ataaaccttag-agttaaacatgacgggcaactccttatagaggatatcaat |
124 |
Q |
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||||||||||| ||||||| | |||||||||| ||||||||||||||||||| |
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|
| T |
39183919 |
ataaaccttaggagttaaatacgacgggcaacaccttatagaggatatcaat |
39183970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 39183846 - 39183883
Alignment:
| Q |
18 |
ccatcaaattcaaggatgcaagaacgctgcaagatttt |
55 |
Q |
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||||||||||| ||||| |||||||||||||||||||| |
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| T |
39183846 |
ccatcaaattctaggatacaagaacgctgcaagatttt |
39183883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4952169 - 4952228
Alignment:
| Q |
19 |
catcaaattcaaggatgcaagaacgctgcaagattttgtttatgttacttcatagataaa |
78 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
4952169 |
catcaaattcaaggatacaagaacgctgcaagattttgtttatgttatctcataaataaa |
4952228 |
T |
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