View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_7 (Length: 462)
Name: NF10456_low_7
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 30349693 - 30349411
Alignment:
| Q |
20 |
aggtcaacctaaaccatattggatatattattactctggagctgaaagtagagcagtgaatttcctggttttggctttaggaggaggactctcgattgca |
119 |
Q |
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| T |
30349693 |
aggtcaacctaaaccatattggatatattattactctggagctgaaagtagagcagtgaatttcctggttttggctttaggaggaggactctcgattgca |
30349594 |
T |
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| Q |
120 |
atgatttttggatgatatcatcatgaaactaaagctaaacttgttcaaataagtttcatctgattaatgttctattctcttattcttgttcacannnnnn |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30349593 |
atgatttttggatgatatcatcatgaaactaaagctaaacttgttcaaataagtttcatcttattaatgttctattctcttattcttgttcaca-ttttt |
30349495 |
T |
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| Q |
220 |
nattatgttttaatttccatgcacttattatgtatgtctttcctaacgtagaggaaagtttattctgatatgtgtttcataata |
303 |
Q |
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| T |
30349494 |
tattatgttttaatttccatgcacttattatgtatgtctttcctaacgtagaggaaagtttattctgatatgtgtttcataata |
30349411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 295 - 451
Target Start/End: Complemental strand, 30349005 - 30348850
Alignment:
| Q |
295 |
ttcataataattcaaaattaaccttagtaacannnnnnnnnnnnnactagtacttaattacgtgtacattgctttt-cagtcgataaaatgtttgaatat |
393 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30349005 |
ttcataataattcaaaattaaccttagtaacaatttttttttt--actagtacttaattacgtgtacattgctttttcagtcgataaaatgtttgaatat |
30348908 |
T |
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| Q |
394 |
gatgatgaacaggcctttacaaaacgattatatgtgtgtatgatgaacatagattctt |
451 |
Q |
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| T |
30348907 |
gatgatgaacaagcctttacaaaatgattatatgtgtgtatgatgaacatagattctt |
30348850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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