View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10456_low_9 (Length: 432)
Name: NF10456_low_9
Description: NF10456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10456_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 159 - 426
Target Start/End: Original strand, 4112189 - 4112455
Alignment:
| Q |
159 |
acacaaatataaccttcatccttagggatttaggttagaatatataaaataaaacctacacaaatataaattacctttaccatccatccaagagcttgtc |
258 |
Q |
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| T |
4112189 |
acacaaataaaaccttcatccttagggatttaggttagaatatataaaataaaacctacacaaatataaattacctttaccatccatccgagaacttgtc |
4112288 |
T |
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| Q |
259 |
aagtttgtttcttgatcttcctcaccccattttcaataaaattggagatgattaagctaccataccacgaagtcaattgttttccattcattgtaaagtt |
358 |
Q |
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| T |
4112289 |
aagtttgtttcttgatcttcctcaccccattttcaataaaattggagatgattaagctaccataccacgaagtcaattgttttccattcattgtaaagtt |
4112388 |
T |
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| Q |
359 |
aattatatccatgtagaacctatcttctttaccttcttcccagccacggcacgtgatcttcatctcac |
426 |
Q |
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| T |
4112389 |
aattatatccatgtagaacctatcttctttaccttcttcccagccacgg-acgtgatcttcacctcac |
4112455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 4111733 - 4111857
Alignment:
| Q |
17 |
aatcataagagcttctcaattcaaataagtatcgaagaactaaagaagtccttacaatgtatatatcaatgaaaagagtttatgaaacaattcatatgct |
116 |
Q |
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| T |
4111733 |
aatcataagagcttctcaattcaaataagtatcgaagaactaaagaagtccttacaatgtatatatcaatgaaaagagtttatgaaacaattcatatgct |
4111832 |
T |
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| Q |
117 |
gaaacttaaataatcagttattcca |
141 |
Q |
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| T |
4111833 |
gaaacttaaataatcagttattcca |
4111857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 253 - 426
Target Start/End: Complemental strand, 4383011 - 4382829
Alignment:
| Q |
253 |
cttgtcaagtttgtttcttgatcttcctcaccccattttcaataaaattggagatgattaagctaccataccacgaagtcaattgttttccatt------ |
346 |
Q |
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| T |
4383011 |
cttgtcaagtttgtttgttgatcttcctctccccattttcaatagcattggagatgattaagttaccatccttccgtgtcaattgttctccattcatatc |
4382912 |
T |
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| Q |
347 |
---cattgtaaagttaattatatccatgtagaacctatcttctttaccttcttcccagccacggcacgtgatcttcatctcac |
426 |
Q |
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| T |
4382911 |
atccattgtaaattcaattgtatccatatagaacttctcttcatcaccttcttcccagccgcagcacgtgatcttcacctcac |
4382829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 4767993 - 4767960
Alignment:
| Q |
89 |
aaagagtttatgaaacaattcatatgctgaaact |
122 |
Q |
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| T |
4767993 |
aaagagattatgaaacaattcatatgctgaaact |
4767960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 4383172 - 4383136
Alignment:
| Q |
197 |
aatatataaaataaaacctacacaaatataaattacc |
233 |
Q |
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| T |
4383172 |
aatatatagaataaaacctacgcaaatataaattacc |
4383136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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