View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10457_low_1 (Length: 573)
Name: NF10457_low_1
Description: NF10457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10457_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 35074506 - 35075062
Alignment:
| Q |
1 |
gagaagcttctttttctgcttcttctcataataatcacgtttctccttctcccagtttcagcagttactcgtcggaaacactcgctgaaatcgccgctag |
100 |
Q |
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| T |
35074506 |
gagaagcttctttttctgcttcttctcataataatcacgtttctccttctcccagtttcagcagttactcgtcggaaacactcgctgaaatcgccgctag |
35074605 |
T |
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| Q |
101 |
agtcatcgatgagcttcggtgggatcctcattccgacgaagacgcgctttatcaaccatgggaagacgacaacaaattgaagactcaaaacgacctcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35074606 |
agtcatcgatgagcttcggtgggatcctcattccgacgaagacgcgctttatcaaccatgggaagacgacaacaaattgaagactcaaaacgacaacgaa |
35074705 |
T |
|
| Q |
201 |
aaagacgaggatagtgaatttgagtttgcggtggtttcgagggattcaacgaatttctcagtggtttccgccgatgacattttctacaacggtcagatca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35074706 |
aaagacgaggatagtgaatttgagtttgcggtggtttcgagggattcaacgaatttctccgtggtttccgccgatgacattttctacaacggtcagatca |
35074805 |
T |
|
| Q |
301 |
aacctttgtattatccagtttttgatcaaaatctactaaacgacgacgatgacggtgccgtttcttccgtttcgccggttccgaacgaaacaacaacacg |
400 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35074806 |
aacctttgtattatccagttttcgatcaaaatctactaaacgacgacgatgacggtgtcgtttcttccgtttcgccggttccgaacgaaacaacaacacg |
35074905 |
T |
|
| Q |
401 |
acgtcgtttaccgctacgaacgctgatgtttgaagaaagcagcgaagctacggcatcgtgttcatcttcaaccgacgagagtgtcgacctagaaggcgta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35074906 |
acgtcgtttaccgctacgaacgctgatgtttgaagaaagcagcgaagctacggcatcgtgttcatcttcaaccgacgagagtatcgacctagaaggcgta |
35075005 |
T |
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| Q |
501 |
gcggaagggagttattgcgtgtggaaccctaattcggttggaattgagcgaaagaag |
557 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35075006 |
gcggaagggagttactgcgtttggaaccctaattcggttggaattgagcgaaagaag |
35075062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 43903068 - 43903105
Alignment:
| Q |
267 |
tccgccgatgacattttctacaacggtcagatcaaacc |
304 |
Q |
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| T |
43903068 |
tccgccgatgacattttccacaacggtcagatcaaacc |
43903105 |
T |
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