View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10457_low_10 (Length: 241)
Name: NF10457_low_10
Description: NF10457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10457_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 53077064 - 53077287
Alignment:
| Q |
1 |
tccaattgcagtaagcaccttctgaaaatgcccaactcggttggtactgtccacaaggtgagctgctttcccgaaaaatgtgtggacaccagttgcagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53077064 |
tccaattgcagtaagcaccttctgaaaatgcccaacttggttggtactgtccacaaggtgagctgctttcccgaaaaatgtgtggacaccagttgcaatg |
53077163 |
T |
|
| Q |
101 |
acaacagcttcaagttcaccttgtttacaagtggagccggagtaaacctcatctccaggatttctagtcacaggaagtgattctccagtcaaagcagact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53077164 |
acaacagcttcaagttcaccttgtttacaagtggagccggagtaaacctcatctccaggatttctagtcacaggaagtgattctccagtcaaagcagact |
53077263 |
T |
|
| Q |
201 |
gatcaatttttaaaggatctccct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
53077264 |
gatcaatttttaaaggatctccct |
53077287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 15867422 - 15867277
Alignment:
| Q |
44 |
gtactgtccacaaggtgagctgctttcccgaaaaatgtgtggacaccagttgcagtgacaacagcttcaagttcaccttgtttacaagtggagccggagt |
143 |
Q |
| |
|
||||||||||| | ||| |||||||| || || |||||||||||||| || || | ||||| ||||| | ||| |||||||| ||||| ||||| ||| |
|
|
| T |
15867422 |
gtactgtccactaagtgtgctgcttttccaaagaatgtgtggacaccggtggctataacaacggcttcgatttctccttgtttgcaagttgagccagaga |
15867323 |
T |
|
| Q |
144 |
aaacctcatctccaggatttctagtcacaggaagtgattctccagt |
189 |
Q |
| |
|
||||||| | ||| |||| ||| || |||||||||||||||||||| |
|
|
| T |
15867322 |
aaacctcttgtcctggatgtcttgttacaggaagtgattctccagt |
15867277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 26788313 - 26788217
Alignment:
| Q |
1 |
tccaattgcagtaagcaccttctgaaaatgcccaactcggttggtactgtccacaaggtgagctgctttcccgaaaaatgtgtggacaccagttgca |
97 |
Q |
| |
|
||||||||| |||||||| || ||||| || |||||| | || |||||||| || | ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26788313 |
tccaattgctgtaagcactttttgaaagtgtccaacttgattagtactgtcaaccaaatgagctgcttttccgaaaaaggtgtggacaccagttgca |
26788217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 974372 - 974519
Alignment:
| Q |
53 |
acaaggtgagctgctttcccgaaaaatgtgtggacaccagttgcagtgacaacagcttcaagttcaccttgtttacaagtggagccggagtaaacctcat |
152 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||||||| |||| | || |||| ||| ||||| || ||||| || || || || | | | |
|
|
| T |
974372 |
acaagatgagctgctttcccgaaaaatgtgtgaactccagttgcaatgactatggcctcaatttctccttgcttgcaagttgaaccagaatatattcctt |
974471 |
T |
|
| Q |
153 |
ctccaggatttctagtcacaggaagtgattctccagtcaaagcagact |
200 |
Q |
| |
|
||||||||| | | |||||||||||||| |||||||| | |||||||| |
|
|
| T |
974472 |
ctccaggatgttttgtcacaggaagtgactctccagtaagagcagact |
974519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 26788147 - 26788108
Alignment:
| Q |
167 |
gtcacaggaagtgattctccagtcaaagcagactgatcaa |
206 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
26788147 |
gtcacaggaagtgattctcctgttaaagcagactgatcaa |
26788108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 1460744 - 1460648
Alignment:
| Q |
1 |
tccaattgcagtaagcaccttctgaaaatgcccaactcggttggtactgtccacaaggtgagctgctttcccgaaaaatgtgtggacaccagttgca |
97 |
Q |
| |
|
||||||||| |||||||| | ||||| || |||||| |||| ||||| || || | ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
1460744 |
tccaattgctgtaagcacttgttgaaagtgtccaacttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgca |
1460648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 1460578 - 1460539
Alignment:
| Q |
167 |
gtcacaggaagtgattctccagtcaaagcagactgatcaa |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1460578 |
gtcacaggaagtgattctcctgtcaaagcagactgatcaa |
1460539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 1498761 - 1498815
Alignment:
| Q |
170 |
acaggaagtgattctccagtcaaagcagactgatcaatttttaaaggatctccct |
224 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || | ||||||||||||| |
|
|
| T |
1498761 |
acaggaagtgattctcctgttaaagcagactgatctatgctcaaaggatctccct |
1498815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University