View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10457_low_12 (Length: 229)
Name: NF10457_low_12
Description: NF10457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10457_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 7013117 - 7013324
Alignment:
| Q |
9 |
caaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctttgggctggttccgccgcggctgttacaccaagca |
108 |
Q |
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| T |
7013117 |
caaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctttgggctggttccgccgcggctgttacaccaagca |
7013216 |
T |
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| Q |
109 |
aagcggtggaggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtg |
208 |
Q |
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| T |
7013217 |
aagcggtggaggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtg |
7013316 |
T |
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| Q |
209 |
gaagaaat |
216 |
Q |
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|||||||| |
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| T |
7013317 |
gaagaaat |
7013324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 7006733 - 7006802
Alignment:
| Q |
9 |
caaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctttggg |
78 |
Q |
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| T |
7006733 |
caaaggaacaaaatggcttgtggtctcgccaacctaacagctagtaaatacggcggtaaccagctttggg |
7006802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 7006846 - 7006894
Alignment:
| Q |
122 |
gtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtg |
170 |
Q |
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| T |
7006846 |
gtgggtgaggaagaaagagctttacattcatgtgaatgatacttgtgtg |
7006894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 33556516 - 33556423
Alignment:
| Q |
117 |
gaggagtgggtgaaggagaaagagttttacattcat-gtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtgga |
210 |
Q |
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| T |
33556516 |
gaggaatgggtgaaggagaaggagttttataatcatagtga-taatacatgtgttgtgaatcataggtgtggtgtttatactcaagttgtttgga |
33556423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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