View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10457_low_3 (Length: 467)
Name: NF10457_low_3
Description: NF10457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10457_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 2003806 - 2003580
Alignment:
| Q |
20 |
atactcaacagtgatcttagattcctcagtacatgtatcatgattaattaagctgtaattttatatcatctcaaacacatgtaaaatatcccactgtgcc |
119 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2003806 |
atacttaacaatgatcttagattcctcagtacatgtatcatgattaattaagctgtaattttatatcatctcaaacacatataaaatatcccactgtgcc |
2003707 |
T |
|
| Q |
120 |
accattgtaaatttgatcttcaacttgcaacannnnnnnnaatatcaaattaatatatcc--ttttttctctctctttgtaccgtatcaaatgctaaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2003706 |
accattgtaaatttgatcttcaacttgcaacattttttttaatatcaaattaatatatccttttttttctctctctttgtaccgtatcaaatgctaaaat |
2003607 |
T |
|
| Q |
218 |
tagtttgcattgtagttgaaattaaac |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2003606 |
tagtttgcattgtagttgaaattaaac |
2003580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 271 - 456
Target Start/End: Complemental strand, 2003547 - 2003360
Alignment:
| Q |
271 |
tgaattcatgagtattgatcactctatatcattaggttgtatattcgtcttaaaagatatcaaataaccattttaaatacaaaaatatgatggaagaaga |
370 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2003547 |
tgaattcatgagtattgatcactctacagcattaggttgtatattcgtcttaaaagatatcaaataaccattttaaatacaaaaatatgatggaagaaga |
2003448 |
T |
|
| Q |
371 |
aaatcagag--nnnnnnnnnnnnnngtcaagtagcatattagttaggaattatcctttttaaggtaaataagtggggtgatcggttca |
456 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2003447 |
aaatcagagttttttttttttttttgtcaagtagcatattagttagaaattatcctttttaaggtagataagtggggtgatcggttca |
2003360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 2009805 - 2009747
Alignment:
| Q |
28 |
cagtgatcttagattcctcagtacatgtatcatgattaattaagctgtaattttatatc |
86 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2009805 |
cagtgatcttagattccttagtacatgtatcttgattaattaaggtgtaattttatatc |
2009747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 2009751 - 2009672
Alignment:
| Q |
105 |
atatcccactgtgccaccattgtaaatttgatcttcaacttgcaacannnnnnnnaatatcaaattaatatatccttttt |
184 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
2009751 |
atatcccatcgtgccaccattgtaattttgatcttcaacttgtaacctttgttttaatatcaaattaatatatctttttt |
2009672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University