View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10457_low_5 (Length: 374)
Name: NF10457_low_5
Description: NF10457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10457_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 23422075 - 23422430
Alignment:
| Q |
1 |
atacagatccatttgccattcttcccacgtgacactcctctgcatccagcaagactcctagtccctcctttatatgtgccatcagtgttaaaatggatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23422075 |
atacagatccatttgccattcttcccacgtgacactcctctgcatccagcaagactcc------ctcctttatatgtgccatcagtgttaaaatggatcc |
23422168 |
T |
|
| Q |
101 |
aactactttcaggggcctaccacttgatactttccaaaacagtcattatatggt---gttatgctcagaagcagttttagcactaattgcataacaatta |
197 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
23422169 |
aactactttcaggggcctaacacttgatactttccaaaacagtcattatatggtggtgttatgctcagaagcagttttagccctaactgcataacaatta |
23422268 |
T |
|
| Q |
198 |
acttgccaaggattactaggtgacataatatcctcatcatgcatcattttgttcctccaattccacaaagtatgacatgtcattgtctaaaaatcagtcc |
297 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23422269 |
acttgccaaggattactaggcgacacaatatcctcatcatgcatcattttgttccttcaattccacaaagtatgacatgtcattgtctaaaaaccagtcc |
23422368 |
T |
|
| Q |
298 |
aatcaaaagcttcctcctaactcaataccatatgcatccataatcaaccgtgttaagccacc |
359 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23422369 |
aatccaaagcttcctcctaactcaataccatatgcatccataatcaaccccgttaagccacc |
23422430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 23420118 - 23420192
Alignment:
| Q |
204 |
caaggattactaggtgacataatatcctcatcatgcatcattttgttcctccaattccacaaagtatgacatgtc |
278 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
23420118 |
caaggattactaggtgacacaaaatcctcatcatgcatcgttctgttcctccaattccacaacgtatgacatgtc |
23420192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 23883182 - 23883108
Alignment:
| Q |
202 |
gccaaggattactaggtgacataatatcctcatcatgcatcattttgttcctccaattccacaaagtatgacatg |
276 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
23883182 |
gccaaggattactaggtgacacaaaatcctcatcatgcatccttctgttcctccaattccacgaagtatgacatg |
23883108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 23876854 - 23876774
Alignment:
| Q |
131 |
tttccaaaacagtcattatatggtgttatgctcagaagcagttttagcactaattgcataacaattaacttgccaaggattac |
213 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
23876854 |
tttccaaaacagtcattgta--gtgttctgctcagaagcagttttagcactaaccacataacaattaacacgccaaggattac |
23876774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 23876748 - 23876675
Alignment:
| Q |
286 |
aaaaatcagtccaatcaaaagcttcctcctaactcaataccatatgcatccataatcaaccgtgttaagccacc |
359 |
Q |
| |
|
||||||||||||| || || |||||||||| || || |||||| |||||||||||||||| |||||| |||| |
|
|
| T |
23876748 |
aaaaatcagtccactccaaggcttcctcctcacgaaacaccataaacatccataatcaaccgcgttaagtcacc |
23876675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University