View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10457_low_6 (Length: 325)
Name: NF10457_low_6
Description: NF10457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10457_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 55939502 - 55939187
Alignment:
| Q |
13 |
attattccatgatgcctgcaggggttttgattgtgagcagaagttcttgaagagtactagggtctcaacagtatcactactactcgtgctagtgctagtg |
112 |
Q |
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| T |
55939502 |
attattccatgatgcctgcaggggttttgattgtgagcagaagttcttgaagagtactagggtctcaacagtatcactactactcgtgctagtgctagtg |
55939403 |
T |
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| Q |
113 |
---------ttgttatcatcttgcatgccctgtgatgttgttggccatagtgaaagagaaacatgaggtggtgatggtgaccctgatgaattgatgttga |
203 |
Q |
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| T |
55939402 |
ctagtgttgttgttatcatcttgcatgccttgtgatgttgttggccatagtgaaagagaaacatgaggtggtgatggtgaccctgatgaattgatgttga |
55939303 |
T |
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| Q |
204 |
tcaattcagggtggaaaaacagccttgtaattggttcgtgactcataccacgactcgaataattcaaatgtttagtttcatgattgccaagcatttttaa |
303 |
Q |
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| T |
55939302 |
tcaattcagggtggaaaaacagccttgtaattggttcgtgactcataccacgactcgaataattcaaatgtttagtttcatgattgccaagcatttttaa |
55939203 |
T |
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| Q |
304 |
tagctctctctgctcc |
319 |
Q |
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||||||||||| |||| |
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| T |
55939202 |
tagctctctcttctcc |
55939187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 9587745 - 9587702
Alignment:
| Q |
134 |
tgtgatgttgttggccatagtgaaagagaaacatgaggtggtga |
177 |
Q |
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| T |
9587745 |
tgtgatgttgttggccaaagagaaagagaaacatgaggtggtga |
9587702 |
T |
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