View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10457_low_7 (Length: 319)

Name: NF10457_low_7
Description: NF10457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10457_low_7
NF10457_low_7
[»] chr3 (2 HSPs)
chr3 (1-313)||(49995606-49995918)
chr3 (103-147)||(8247541-8247585)
[»] chr7 (1 HSPs)
chr7 (104-154)||(7139752-7139802)
[»] chr5 (3 HSPs)
chr5 (114-164)||(19045555-19045605)
chr5 (103-149)||(28173086-28173132)
chr5 (103-135)||(28575807-28575839)
[»] chr6 (1 HSPs)
chr6 (104-132)||(23918352-23918380)
[»] chr4 (1 HSPs)
chr4 (103-151)||(6424204-6424252)
[»] chr2 (2 HSPs)
chr2 (103-151)||(35198232-35198280)
chr2 (103-151)||(42043198-42043246)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 49995606 - 49995918
Alignment:
Q  1 tgcaatcataatcattgttagcactaacttcatccaaatgacctctgtagcaacggcacttatgatggaaagcgtgtacgatgtttgatacatataggtg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  49995606 tgcaatcataatcattgttagcaataacttcatccaaatgacctctgtagcaatggcacttatgatggaaagcgtgtacaatgtttgatacatataggtg 49995705  T
Q  101 tggacaccgacacatgtaattgcattcaattaattcaattttttaaattatcactgatgtcgatttcttagtgtcgtgtccggtgtccgagtatgtgatt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49995706 tggacaccgacacatgtaattacattcaattaattcaattttttaaattatcactgatgtcgatttcttagtgccgtgtccggtgtccgagtatgtgatt 49995805  T
Q  201 gatagcaaataacttataactactctatcaattttataaaaaatcaggtttacacacaacaaatacagtccattggagacaaataccttgtactctattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49995806 gatagcaaataacttataactactctatcaattttataaaaaatcaggtttacacacaacaaatacagtccattggagacaaataccttgtactctattt 49995905  T
Q  301 gggaggaactact 313  Q
    |||||||||||||    
T  49995906 gggaggaactact 49995918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 8247541 - 8247585
Alignment:
Q  103 gacaccgacacatgtaattgcattcaattaattcaattttttaaa 147  Q
    ||||||||||||||||||| ||| || | ||||||||||||||||    
T  8247541 gacaccgacacatgtaattacatccagtcaattcaattttttaaa 8247585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 7139752 - 7139802
Alignment:
Q  104 acaccgacacatgtaattgcattcaattaattcaattttttaaattatcac 154  Q
    |||| ||||||||| |||||||||| |||||||| ||| ||||||||||||    
T  7139752 acactgacacatgttattgcattcagttaattcattttcttaaattatcac 7139802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 19045605 - 19045555
Alignment:
Q  114 atgtaattgcattcaattaattcaattttttaaattatcactgatgtcgat 164  Q
    |||| ||| |||| |||||||||| |||||||||||||||||||| |||||    
T  19045605 atgtgattacatttaattaattcatttttttaaattatcactgatctcgat 19045555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 28173086 - 28173132
Alignment:
Q  103 gacaccgacacatgtaattgcattcaattaattcaattttttaaatt 149  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  28173086 gacactgacacatgtaactgcattcaattaattcattttttcaaatt 28173132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 28575839 - 28575807
Alignment:
Q  103 gacaccgacacatgtaattgcattcaattaatt 135  Q
    ||||||| |||||||||||||||||||||||||    
T  28575839 gacaccgtcacatgtaattgcattcaattaatt 28575807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 23918352 - 23918380
Alignment:
Q  104 acaccgacacatgtaattgcattcaatta 132  Q
    |||||||||||||||||||||||||||||    
T  23918352 acaccgacacatgtaattgcattcaatta 23918380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 6424204 - 6424252
Alignment:
Q  103 gacaccgacacatgtaattgcattcaattaattcaattttttaaattat 151  Q
    ||||||||||||||| |||||||| ||||||||||  ||||||| ||||    
T  6424204 gacaccgacacatgtgattgcattgaattaattcatctttttaagttat 6424252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 35198232 - 35198280
Alignment:
Q  103 gacaccgacacatgtaattgcattcaattaattcaattttttaaattat 151  Q
    ||||||| ||||||| ||| ||||||||||||||| ||| |||||||||    
T  35198232 gacaccgtcacatgtgattacattcaattaattcattttcttaaattat 35198280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 42043198 - 42043246
Alignment:
Q  103 gacaccgacacatgtaattgcattcaattaattcaattttttaaattat 151  Q
    ||||||||| ||||| ||| ||||||||||||||| ||| |||||||||    
T  42043198 gacaccgacgcatgttattacattcaattaattcattttattaaattat 42043246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University