View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10458_high_16 (Length: 215)

Name: NF10458_high_16
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10458_high_16
NF10458_high_16
[»] chr1 (19 HSPs)
chr1 (1-208)||(9488510-9488717)
chr1 (1-168)||(9463916-9464082)
chr1 (47-158)||(9318283-9318394)
chr1 (166-208)||(9464243-9464285)
chr1 (55-188)||(8920710-8920843)
chr1 (55-188)||(8932115-8932248)
chr1 (52-161)||(9234049-9234158)
chr1 (43-164)||(10974248-10974369)
chr1 (52-164)||(9096796-9096908)
chr1 (52-167)||(8964523-8964638)
chr1 (47-161)||(9319908-9320022)
chr1 (55-161)||(9350233-9350339)
chr1 (52-161)||(8999674-8999783)
chr1 (52-164)||(9104978-9105090)
chr1 (55-185)||(8942031-8942161)
chr1 (29-95)||(10903417-10903483)
chr1 (55-188)||(8956037-8956170)
chr1 (52-161)||(9384236-9384345)
chr1 (41-161)||(9142861-9142981)
[»] chr6 (1 HSPs)
chr6 (47-161)||(15927186-15927300)
[»] chr3 (1 HSPs)
chr3 (47-161)||(9159598-9159712)
[»] chr4 (1 HSPs)
chr4 (35-167)||(27692414-27692546)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9488510 - 9488717
Alignment:
Q  1 taaacttgactcttatgatcttccccctcattcatgttccttcttctactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatg 100  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |    
T  9488510 taaacttgactcttatgatcttcactctcattcatgttccttctcctactcgccatttccattaacaacattccaaagctataaacatctgctttgtacg 9488609  T
Q  101 atactcctccaatgttcttatagaacaactctggcgccatgtatcccatagttcctcttgcagctgtaagagacacaatgctattgtccgttggatataa 200  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488610 atactcctccaatattcttatagaacaattctggtgccatgtatcccatagttcctcttgcagctgtaagagacacaatgctattgtccgttggatataa 9488709  T
Q  201 ctttgcta 208  Q
    ||||||||    
T  9488710 ctttgcta 9488717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 9463916 - 9464082
Alignment:
Q  1 taaacttgactcttatgatcttccccctcattcatgttccttcttctactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatg 100  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| || |    
T  9463916 taaacttgactcttatgatcttcactctcattcatgttccttctcctactcgccatttccattaacaacattccaa-gctataaacatctgctttgtacg 9464014  T
Q  101 atactcctccaatgttcttatagaacaactctggcgccatgtatcccatagttcctcttgcagctgta 168  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9464015 atactcctccaatgttcttatagaacaactctggtgccatgtatcccatagttcctcttgcagctgta 9464082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 9318394 - 9318283
Alignment:
Q  47 tactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcc 146  Q
    |||| ||||||||||| || | |||||||||||| || ||||| || || || |||||||||||||| || || |||||||| || || |||||||||||    
T  9318394 tacttgccatttccatcaaaagcattccaaagctatatacatcggccttgtaggatactcctccaatatttttgtagaacaattcaggagccatgtatcc 9318295  T
Q  147 catagttcctct 158  Q
     || ||||||||    
T  9318294 aattgttcctct 9318283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 9464243 - 9464285
Alignment:
Q  166 gtaagagacacaatgctattgtccgttggatataactttgcta 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  9464243 gtaagcgacacaatgctattgtccgttggatataactttgcta 9464285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 8920710 - 8920843
Alignment:
Q  55 atttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatagttc 154  Q
    |||||||| || | |||||||||||| || ||||| || ||||| || |||   ||||| || || |||||||||||||| |||||||| || || ||||    
T  8920710 atttccatcaagagcattccaaagctatatacatcggccttataggagactttaccaatatttttgtagaacaactctggtgccatgtaaccaattgttc 8920809  T
Q  155 ctcttgcagctgtaagagacacaatgctattgtc 188  Q
    |||||||||| || | ||  ||||||||||||||    
T  8920810 ctcttgcagcagtcaaagttacaatgctattgtc 8920843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 8932115 - 8932248
Alignment:
Q  55 atttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatagttc 154  Q
    ||||||||||| | |||||||||||| || ||||| || ||||| || |||   ||||| || || |||||||| ||||| |||||||| || || ||||    
T  8932115 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgttc 8932214  T
Q  155 ctcttgcagctgtaagagacacaatgctattgtc 188  Q
    |||||||||| || | ||  ||||||||||||||    
T  8932215 ctcttgcagcagtcaaagttacaatgctattgtc 8932248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 9234158 - 9234049
Alignment:
Q  52 gccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatag 151  Q
    ||||||||||| || | ||||||||| ||||| ||||| ||||| || || ||||| ||||| || || |||||||| || || |||||||| |||| ||    
T  9234158 gccatttccatcaaaagcattccaaaactgtatacatcagctttgtacgacactccaccaatatttttgtagaacaattcaggagccatgtaacccaaag 9234059  T
Q  152 ttcctcttgc 161  Q
    ||||||||||    
T  9234058 ttcctcttgc 9234049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 10974248 - 10974369
Alignment:
Q  43 cttctactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgt 142  Q
    |||||||||||||| |||||||||||||| |||||||| || ||||| ||||| || |||| |   ||||| ||  | |||||||  || || |||||||    
T  10974248 cttctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcaggggccatgt 10974347  T
Q  143 atcccatagttcctcttgcagc 164  Q
    |||| || ||||||||||||||    
T  10974348 atccaatcgttcctcttgcagc 10974369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 9096908 - 9096796
Alignment:
Q  52 gccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatag 151  Q
    ||||| ||||| || | ||| |||||||| |||||||| |||||||| || ||||| ||||| || || |||||||| ||||| ||||| ||||| || |    
T  9096908 gccatctccatcaaaagcatcccaaagctataaacatcagctttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattg 9096809  T
Q  152 ttcctcttgcagc 164  Q
    | |||||||||||    
T  9096808 tacctcttgcagc 9096796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 8964523 - 8964638
Alignment:
Q  52 gccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatag 151  Q
    ||||| ||||| || | ||| |||||||| |||||||| || ||||| || ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |    
T  8964523 gccatctccatcaaaagcatcccaaagctataaacatcagccttataggacactcccccaatatttttatagaacaattctggagccatatatccaatgg 8964622  T
Q  152 ttcctcttgcagctgt 167  Q
    | |||||||| |||||    
T  8964623 tacctcttgccgctgt 8964638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 9319908 - 9320022
Alignment:
Q  47 tactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcc 146  Q
    |||| ||||||||||| || | |||||| ||||| || ||||| || || || |||||||||||||| || || |||||||| || || ||||| |||||    
T  9319908 tacttgccatttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaattcaggagccatatatcc 9320007  T
Q  147 catagttcctcttgc 161  Q
     || |||||||||||    
T  9320008 aattgttcctcttgc 9320022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 9350233 - 9350339
Alignment:
Q  55 atttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatagttc 154  Q
    |||||||| || | |||||| ||||| || ||||| || || || |||||||||||||| || || ||||||||||| || ||||| ||||| || ||||    
T  9350233 atttccatcaaaagcattccgaagctatatacatcagccttgtaggatactcctccaatatttttgtagaacaactcaggagccatatatccaattgttc 9350332  T
Q  155 ctcttgc 161  Q
    |||||||    
T  9350333 ctcttgc 9350339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 8999674 - 8999783
Alignment:
Q  52 gccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatag 151  Q
    ||||| ||||| || | ||| |||||||| |||||||| || ||||| || ||||| ||||| || ||||||||||| ||||| ||||| ||||| || |    
T  8999674 gccatctccatcaaaagcatcccaaagctataaacatcagccttataagacactcccccaatatttttatagaacaattctggagccatatatccaatgg 8999773  T
Q  152 ttcctcttgc 161  Q
    | ||||||||    
T  8999774 tacctcttgc 8999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 9105090 - 9104978
Alignment:
Q  52 gccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatag 151  Q
    ||||| ||||| || | ||| |||||||| |||||||| || ||||| || ||||| ||||| || || |||||||| ||||| ||||| ||||| || |    
T  9105090 gccatctccatcaaaagcatcccaaagctataaacatcagccttataggaaactcccccaatatttttgtagaacaattctggagccatatatccaattg 9104991  T
Q  152 ttcctcttgcagc 164  Q
    | |||||||||||    
T  9104990 tacctcttgcagc 9104978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 8942031 - 8942161
Alignment:
Q  55 atttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatagttc 154  Q
    ||||||||||| | |||||||||||| || ||||| |||||||| || |||   ||||| || || |||||||| ||||| |||||||| || || || |    
T  8942031 atttccattaagagcattccaaagctatacacatcggctttataggaaactttaccaatatttttgtagaacaattctggtgccatgtaaccaattgtac 8942130  T
Q  155 ctcttgcagctgtaagagacacaatgctatt 185  Q
    |||| ||||| || | ||  |||||||||||    
T  8942131 ctctagcagcggtcatagttacaatgctatt 8942161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 10903417 - 10903483
Alignment:
Q  29 cattcatgttccttcttctactcgccatttccattaacaacattccaaagctgtaaacatctgcttt 95  Q
    |||||| |||| | |||||||| ||||| |||||||||||||| |||||||| || ||||| |||||    
T  10903417 cattcaagttcttccttctacttgccatctccattaacaacatcccaaagctatagacatcagcttt 10903483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 8956037 - 8956170
Alignment:
Q  55 atttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatagttc 154  Q
    ||||||||||| | |||||||||||| || ||||| || ||||| || |||   ||||| || || ||||| || || || |||||||| || || ||||    
T  8956037 atttccattaagagcattccaaagctatacacatcggccttataggaaactttaccaatatttttgtagaataattccggagccatgtaaccaattgttc 8956136  T
Q  155 ctcttgcagctgtaagagacacaatgctattgtc 188  Q
    |||||||||| || | ||  ||||||||||||||    
T  8956137 ctcttgcagccgtcaaagttacaatgctattgtc 8956170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 9384236 - 9384345
Alignment:
Q  52 gccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcccatag 151  Q
    ||||||||||| || | |||||||||||| || ||||| || || || || ||||| ||||| || || |||||||  || || |||||||| |||| ||    
T  9384236 gccatttccatcaaaagcattccaaagctatatacatcagccttgtaagacactccaccaatatttttgtagaacagttcaggagccatgtaacccaaag 9384335  T
Q  152 ttcctcttgc 161  Q
    ||||||||||    
T  9384336 ttcctcttgc 9384345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 9142981 - 9142861
Alignment:
Q  41 ttcttctactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccat 140  Q
    ||||| |||| ||||| ||||| || | ||| || || || |||||||| || ||||| || ||||| ||||| || || ||||||||||| || |||||    
T  9142981 ttcttttacttgccatctccatcaaaagcatcccgaaactataaacatcggccttataggacactcccccaatatttttgtagaacaactccggagccat 9142882  T
Q  141 gtatcccatagttcctcttgc 161  Q
     ||||| ||||| ||||||||    
T  9142881 atatccaatagtacctcttgc 9142861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 15927300 - 15927186
Alignment:
Q  47 tactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcc 146  Q
    |||| ||||||||||| || | |||||||||||| || ||||| || ||||| || ||||||||||| || || ||||| || || || |||||||||||    
T  15927300 tacttgccatttccatcaaaagcattccaaagctatatacatcggccttatacgaaactcctccaatatttttgtagaataattcaggagccatgtatcc 15927201  T
Q  147 catagttcctcttgc 161  Q
     || |||||||||||    
T  15927200 aatcgttcctcttgc 15927186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 9159598 - 9159712
Alignment:
Q  47 tactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctggcgccatgtatcc 146  Q
    |||| ||||||||||| || | ||||||||| || |||||||| || || ||||||||||| ||||| || || ||||||||||| || ||||| || ||    
T  9159598 tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgatactccaccaatatttttgtagaacaactcgggagccatataacc 9159697  T
Q  147 catagttcctcttgc 161  Q
     || |||||||||||    
T  9159698 aattgttcctcttgc 9159712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 27692414 - 27692546
Alignment:
Q  35 tgttccttcttctactcgccatttccattaacaacattccaaagctgtaaacatctgctttatatgatactcctccaatgttcttatagaacaactctgg 134  Q
    ||||| || ||||||  ||||||||||||| || ||||||||| || |||||||| ||||| |  || |    |||||||||||| || |||||||| ||    
T  27692414 tgttcttttttctacctgccatttccattagcatcattccaaaactataaacatcagctttgtgagagatgtttccaatgttcttgtataacaactcagg 27692513  T
Q  135 cgccatgtatcccatagttcctcttgcagctgt 167  Q
     |||||||| ||||| ||||||||||| |||||    
T  27692514 agccatgtaccccattgttcctcttgccgctgt 27692546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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