View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_high_6 (Length: 348)
Name: NF10458_high_6
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 51898551 - 51898878
Alignment:
| Q |
12 |
cataggacaacataaatctctggtaacactaccccaaccctgtccctctttataacat------------taccctaagaaacagatagatagagaataa |
99 |
Q |
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| T |
51898551 |
cataggacaacataaatctctggtaacac---cccaaccctgtccctctttataacattacattatacattaccctaagaaacagatagatagagaataa |
51898647 |
T |
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| Q |
100 |
tggcaatttcagggtgtgagtcatcacaacagattccaacttctactgtgaaaactgttaatcaggtagaagttgagtctgtgaaatgtgactcatgcgg |
199 |
Q |
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| T |
51898648 |
tggcaatttcagggtctgagtcatcacaacagactccaacttctactgtgaaaactgttaatcaggtagaagttgagtcagtgaaatgtgactcatgcgg |
51898747 |
T |
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| Q |
200 |
tttcacagaagaatgcacacttgcatacatctcaaaagtacgtcagagataccaaggtagatggctttgtggactttgtgttgaagcagtgaaagatgaa |
299 |
Q |
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| T |
51898748 |
tttcacagaagaatgcacacttgcatacatctcaaaagtacgtcagagataccaaggtagatggctttgtggactttgtgttgaagcagtgaaagatgaa |
51898847 |
T |
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| Q |
300 |
gttgttagatcagagagactcatcaccattg |
330 |
Q |
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| T |
51898848 |
gttgttagatcagagagactcatcaccattg |
51898878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 137 - 330
Target Start/End: Original strand, 51887127 - 51887320
Alignment:
| Q |
137 |
aacttctactgtgaaaactgttaatcaggtagaagttgagtctgtgaaatgtgactcatgcggtttcacagaagaatgcacacttgcatacatctcaaaa |
236 |
Q |
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| T |
51887127 |
aacttctactgtcaaaattgttaatcaggtagaagttgagtgtgtgaaatgctactcatgtggtttcacagaggaatgcacacctgcatacatatcaaaa |
51887226 |
T |
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| Q |
237 |
gtacgtcagagataccaaggtagatggctttgtggactttgtgttgaagcagtgaaagatgaagttgttagatcagagagactcatcaccattg |
330 |
Q |
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| T |
51887227 |
gtatgtcaaagataccaaggcaaatggctttgcggattgtgtgctgaagcagtgaaagatgaggttgttagatcaaagagacgtatcaccattg |
51887320 |
T |
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