View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_high_8 (Length: 322)
Name: NF10458_high_8
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 4399085 - 4398782
Alignment:
| Q |
17 |
taggcttacggagggaggaagacatatgttacagtcttttgaacgtataaccatgaataagtgaacgatctcttgtatccaatgatgatattatggattt |
116 |
Q |
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| T |
4399085 |
taggcttacggagggaggaagacatatgttacagtcttttgaacgaataaccatgaataagtgaacgatctcttgtatccaatgatgatattatgga-tt |
4398987 |
T |
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| Q |
117 |
ttgaaacacttgatttatagttatgtgtgtatgtttgtgatattttatgtaaagcgatatgttaacatcctaagcatgtctggaaaaatcatgnnnnnnn |
216 |
Q |
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|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4398986 |
ttgaaacacttgatttatagttatgtgtatgt-tttgtgatattttatgtaaagcgatatgttaacatcctaagcatgtctggaaaaattatg-aaaaaa |
4398889 |
T |
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| Q |
217 |
ttcaacatttagatcatttttattggactatatgtatattg-aaggtnnnnnnnnnnnntaattttttggactacatatattgcgtatattacagagtca |
315 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4398888 |
ttcaacatttagatcattttttttggactatatgtatattgtaaggtaaaaaataaaaataattttttggactacatatattacgtatattacagagtca |
4398789 |
T |
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| Q |
316 |
atttaac |
322 |
Q |
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||||||| |
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| T |
4398788 |
atttaac |
4398782 |
T |
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