View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_10 (Length: 340)
Name: NF10458_low_10
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 17454398 - 17454732
Alignment:
| Q |
1 |
caactatgacaaggaaaaactatcaactaaacaagaaaaagaagacaacaataccatcaacaacaacatttctccgccctattgaatgaagtggaagcac |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17454398 |
caactatgacaaggaaaaactatctcctaaacaagaaaaagaagacaacaacaccatcaacaacaa-atttctccgccctattgaatgaagtggaagcac |
17454496 |
T |
|
| Q |
101 |
tcataggatatgagtttaagaataagcacttattggaagaggctttcacacaacacttatggtgctgaaaatgacttatcttatgagtagtcggaatacg |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17454497 |
tcataggatatgagtttaagaataaacacttattggaagaggctttcacacagcacttatggtgctgaaaatgacttatcttatgagtagtcggaatacg |
17454596 |
T |
|
| Q |
201 |
tgggagattctgttcttaacttgttgatagcaaagaaacag----------nnnnnnncatatccgaatttgaaacctggtattttgactccattacgat |
290 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |
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| T |
17454597 |
tgggaggtgttgttcttaacttgttgatagcaaagaaacagtttttttttttttttttcatatctgaatttgaaacccggtattttgactccattacgat |
17454696 |
T |
|
| Q |
291 |
ccaagaatgcggactatgaaaaactggcatgtgtag |
326 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |
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| T |
17454697 |
ccaagaatgcggactctgaaaaactggcatgtgtag |
17454732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 17454113 - 17453801
Alignment:
| Q |
1 |
caactatgacaaggaaaaactatcaactaaacaagaaaaagaagacaacaataccatcaacaacaacatttctccgccctattgaatgaagtggaagcac |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
17454113 |
caactatgacaaggaaaaactatctcctaaacaagaaaaagaagacaacaacaccatcaacaacaacatttatccgccatattgaatgaagtggaagcac |
17454014 |
T |
|
| Q |
101 |
tcataggatatgagtttaagaataagcacttattggaagaggctttcacacaacacttatggtgctgaaaatgacttatcttatgagtagtcggaatacg |
200 |
Q |
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| T |
17454013 |
tcataggatatgagtttaagaataagcacttattgaaagaggctttcacacagcacttatggtgctgaaaatgatttatcttatgagtagtcggaataca |
17453914 |
T |
|
| Q |
201 |
tgggagattctgttcttaacttgttgatagcaaagaaacagnnnnnnncatatccgaatttgaaacctggtattttgactccattacgatccaagaatgc |
300 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| |
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| T |
17453913 |
tgggagatgttgttattaacttgttgatagcaaagaaacagtttttttcatatccaaatttgaaacc-ggtattttgactccattacaatctaagaatgt |
17453815 |
T |
|
| Q |
301 |
ggactatgaaaaac |
314 |
Q |
| |
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||||| | |||||| |
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| T |
17453814 |
ggactctaaaaaac |
17453801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 10489123 - 10488899
Alignment:
| Q |
18 |
aactatcaactaaacaagaaaaagaagacaacaataccatcaacaacaacatttctccgcc----ctattgaatgaagtggaagcactcataggatatga |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||| |
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| T |
10489123 |
aactatctcctaaacaagaaaaagaagacatcg---ccagcaacaacaacatttctccgccacctcaattgaatgaagtggaagcaatcatatgatatga |
10489027 |
T |
|
| Q |
114 |
gtttaagaataagcacttattggaagaggctttcacacaa--cacttatggtgctgaaaatgacttatcttatgagtagtcggaatacgtgggagattct |
211 |
Q |
| |
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|| |||||||| | ||||||||||||||||||||||| |||||| |||||||||||||| |||||||| || || ||||||||| || ||| | |
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| T |
10489026 |
tttcaagaataaaaa-ttattggaagaggctttcacacatagcacttacagtgctgaaaatgacatatcttataagcggttggaatacgtcggtgatgtt |
10488928 |
T |
|
| Q |
212 |
gttcttaacttgttgatagcaaagaaaca |
240 |
Q |
| |
|
||||||||||||||||||| |||| |||| |
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| T |
10488927 |
gttcttaacttgttgatagaaaaggaaca |
10488899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 324
Target Start/End: Original strand, 10489538 - 10489731
Alignment:
| Q |
132 |
attggaagaggctttcacacaa--cacttatggtgctgaaaatgacttatcttatgagtagtcggaatacgtgggagattctgttcttaacttgttgata |
229 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| ||| || || || ||| ||| |||||||||| ||||||| |
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| T |
10489538 |
attggaagaggctttcacacatagcacttacggtgttgaaaatgacttatcttatgagcagttgggattcg-gggtgatgttgttcttaacatgttgatt |
10489636 |
T |
|
| Q |
230 |
gcaaagaaacagnnnnnnncatatccgaatttgaaacctggtattttgactccattacgatccaagaatgcggactatgaaaaactggcatgtgt |
324 |
Q |
| |
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| ||| ||||| ||||||| |||||||||| ||||||||||||| |||||||||||| |||| || ||| |||||||||||| |||| |
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| T |
10489637 |
gaaaaagaacagtttttttcatatccaaatttgaaactaggtattttgactctattacgatccaaaaatgtggtctacgaaaaactggcacgtgt |
10489731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 10489455 - 10489498
Alignment:
| Q |
27 |
ctaaacaagaaaaagaagacaacaataccatcaacaacaacatt |
70 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
10489455 |
ctaaacaagaaaatgaagacaacaccaccatcaacaacaacatt |
10489498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 36160546 - 36160233
Alignment:
| Q |
9 |
acaaggaaaaactatcaactaaacaagaaaaagaagacaacaataccatcaacaacaacatttctccgcc-------ctattgaatgaagtggaagcact |
101 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| | || |||||||||||| | | |
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| T |
36160546 |
acaaagaaaaactatctcctaaacaagaaaaagaagacacaaccaccatcaacaacaacatttctccgccgccgccgccgctgtatgaagtggaagaaat |
36160447 |
T |
|
| Q |
102 |
cataggatatgagtttaagaataagcacttattggaagaggctttcacac--aacacttatggtgctgaaaatgacttatcttatgagtagtcggaatac |
199 |
Q |
| |
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| ||||||||||||||||||| ||||| ||||||||||||||| |||||| | |||||| || ||||| ||||| ||||||| | |||||| |
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| T |
36160446 |
cctaggatatgagtttaagaacaagcagttattggaagaggctctcacacataccacttacggagctgagaatga------ttatgagcgattggaatat |
36160353 |
T |
|
| Q |
200 |
gtgggagattctgttcttaacttgttgatagcaaagaaacagnnnnnnncatatccgaatttgaaacctggtattttgactccattacgatccaagaatg |
299 |
Q |
| |
|
|| || ||| ||||||||||||||||||| |||| | ||||| ||||||| ||||||||||||||||||||||||| ||| || || || |||| |
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| T |
36160352 |
gtaggtgatgctgttcttaacttgttgatggcaagggaacagtttgtttcatatccaaatttgaaacctggtattttgactcaattgcggtcaaaaaatg |
36160253 |
T |
|
| Q |
300 |
cggactatgaaaaactggca |
319 |
Q |
| |
|
||||| |||||| |||||| |
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| T |
36160252 |
tggactctgaaaagctggca |
36160233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 324
Target Start/End: Complemental strand, 36173775 - 36173539
Alignment:
| Q |
86 |
atgaagtggaagcactcataggatatgagtttaagaataagcacttattggaagaggctttcacac--aacacttatggtgctgaaaatgacttatctta |
183 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||| |||| || ||||| |
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|
| T |
36173775 |
atgaagtggaagcaattctaggatatgagtttaagaataagcacttattggaagaggctttcacacatagcacttatggagcggaagatgatttgtctta |
36173676 |
T |
|
| Q |
184 |
tgagtagtcggaatacgtgggagattctgttcttaacttgttgatagcaaagaaacagnnnnnnncatatccgaatttgaaacctggtattttgactcca |
283 |
Q |
| |
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|||| | | |||||| |||| ||| |||||||| ||||||| |||||||| ||||| ||||||| |||||||| || | ||||||||| | |
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| T |
36173675 |
tgagcaattggaatatttgggtgatgctgttcttggcttgttggtagcaaaggaacagttcttttcatatccaaatttgaagccaaattttttgactcta |
36173576 |
T |
|
| Q |
284 |
ttacgatccaagaatgcggactatgaaaaactggcatgtgt |
324 |
Q |
| |
|
||||||| ||||| ||||| |||||| |||||| |||| |
|
|
| T |
36173575 |
ttacgat----gaatgtggactctgaaaagctggcacgtgt |
36173539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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