View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10458_low_15 (Length: 270)
Name: NF10458_low_15
Description: NF10458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10458_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 6787458 - 6787334
Alignment:
| Q |
56 |
tcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaagctgatttagaaaacttggctgttaagagaggacaagctcttgc |
155 |
Q |
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| T |
6787458 |
tcatgaaaaggaattggatattccataaacgtccgggaggttagcaaacaaaacaagctgattttgaaaacttggttgttaagacaggacatgctcttgc |
6787359 |
T |
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| Q |
156 |
agttactttgttcttcagctgcaat |
180 |
Q |
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| T |
6787358 |
agttactttgttcttcagctgcaat |
6787334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 6943307 - 6943408
Alignment:
| Q |
13 |
agagatgaatgattgaaacttacctcttgataattacaggcattcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaag |
112 |
Q |
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| T |
6943307 |
agagattaatgattgaaacttacctcatgataattacaggcattcatgaagaggtattggattttccataaacgtccgggaggttagcaaacagaagaag |
6943406 |
T |
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| Q |
113 |
ct |
114 |
Q |
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| T |
6943407 |
ct |
6943408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 6940139 - 6940212
Alignment:
| Q |
41 |
gataattacaggcattcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaagct |
114 |
Q |
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| T |
6940139 |
gataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct |
6940212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 6943404 - 6943502
Alignment:
| Q |
146 |
aagctcttgcagttactttgttcttcagctgcaatttcttcttgccactgatgatgaattgattgggagtgtctcaccagcagaatcagcatccaccaa |
244 |
Q |
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| T |
6943404 |
aagctcttgcagttactttgttcttgagatgcaatctctccttgacactgatgatgaaatggttgagagggtctcaccagcagaatcagcatctaccaa |
6943502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 6940208 - 6940305
Alignment:
| Q |
146 |
aagctcttgcagttactttgttcttcagctgcaatttcttcttgccactgatgatgaattgattgggagtgtctcaccagcagaatcagcatccaccaa |
244 |
Q |
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| T |
6940208 |
aagctctttcagttactt-gttcttcagatgcaatctctccttgacactgatgatgagatggttgagaggatctcaccagcagaatgagcatctaccaa |
6940305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 6859485 - 6859396
Alignment:
| Q |
115 |
gatttagaaaacttggctgttaagagaggacaagctcttgcagttactt-tgttcttcagctgcaatttcttcttgccactgatgatgaa |
203 |
Q |
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| T |
6859485 |
gattttgaaaacttgcctgtcaagacaggagatgctgttgcaatttcttctgttcttcagctgcattctctccttgctactgatgatgaa |
6859396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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